Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g1444 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1446 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1447 . . . . . Adu03g03065 Aed5g2101 . Aev03g2890 . Ahy13g3094 . Aip03g03501 . . . Amo13g3772 . . . . Arst3g04034 . . . . Bva05g01583 . . . Cca09g02236 . . . Dod04g2512 . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g03413 . Lasa7g04489 . . . . . . . . . Lja4g0621 . Mal7g4714 . Mepo2g04394 . Mesa13g00730 . . . Mtr8g3260 . . . Phco4g03057 . . . . . . . . . . . Pumo6g00694 . Pvu2g2775 . Rops2g00806 . Seca12g06257 . Spst3g01339 Ssu5g2837 . . . . Tpr3g0846 . Trre7g05163 . Tsu02g00684 . Vian1g03640 . Vifa6g03197 . Vimu11g04150 . Viun3g00882 . Vivi5g04415 . .
Vvi4g1448 . . . . . . . . . Aev08g0606 . Ahy20g1977 . Aip10g02320 . . . Amo20g2514 Apr1g0478 . . . . . . . . . . . . . . . . Dod09g1787 . . . . . . . . . . . . Lal21g0656 . . . . . Lan3g0722 . . . . . . . . . . . . . . . . . Lja1g4527 . Mal2g1537 . . . . . . . Mtr3g3322 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto4g0317 Tpr3g3118 . . . . . . . . . . . . . . . . .
Vvi4g1449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1450 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1452 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1453 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vvi Vvi4g1444 Chr4 21501186 21504309 +
Vvi Vvi4g1445 Chr4 21519493 21519810 +
Vvi Vvi4g1446 Chr4 21525113 21528537 +
Vvi Vvi4g1447 Chr4 21549233 21550687 +
Adu Adu03g03065 Chr03 114960617 114962125 -
Aed Aed5g2101 Chr5 23375109 23376569 +
Aev Aev03g2890 Chr03 28268180 28269667 +
Ahy Ahy13g3094 Chr13 124753374 124754807 -
Aip Aip03g03501 Chr03 114727845 114729248 -
Amo Amo13g3772 Chr13 127191340 127192848 -
Arst Arst3g04034 Chr3 113675274 113677118 -
Bva Bva05g01583 Chr05 12948217 12949632 -
Cca Cca09g02236 Chr09 47570158 47571768 +
Dod Dod04g2512 Chr04 48939287 48940783 +
Lapu Lapu3g03413 Chr3 57359254 57360702 +
Lasa Lasa7g04489 Chr7 663563475 663564932 +
Lja Lja4g0621 Chr4 5141027 5142750 -
Mal Mal7g4714 Chr7 115353500 115355023 +
Mepo Mepo2g04394 Chr2 52475324 52476847 +
Mesa Mesa13g00730 Chr13 8689922 8691445 -
Mtr Mtr8g3260 Chr8 43060875 43062398 +
Phco Phco4g03057 Chr4 51558720 51560168 +
Pumo Pumo6g00694 Chr6 8725902 8727350 -
Pvu Pvu2g2775 Chr2 43474257 43475848 +
Rops Rops2g00806 Chr2 11594848 11596341 -
Seca Seca12g06257 Chr12 154412623 154414086 +
Spst Spst3g01339 Chr3 16805473 16806921 -
Ssu Ssu5g2837 Chr5 74471870 74473324 +
Tpr Tpr3g0846 Chr3 7975009 7976875 -
Trre Trre7g05163 Chr7 58233394 58234899 +
Tsu Tsu02g00684 Chr02 5802933 5804438 -
Vian Vian1g03640 Chr1 59151593 59153056 +
Vifa Vifa6g03197 Chr6 1055454346 1055455806 +
Vimu Vimu11g04150 Chr11 63129513 63130943 +
Viun Viun3g00882 Chr3 5433250 5434825 -
Vivi Vivi5g04415 Chr5 141888041 141889681 +
Vvi Vvi4g1448 Chr4 21552038 21558551 +
Aev Aev08g0606 Chr08 3474065 3476291 +
Ahy Ahy20g1977 Chr20 111630134 111632114 +
Aip Aip10g02320 Chr10 104629905 104631861 +
Amo Amo20g2514 Chr20 117729440 117731095 +
Apr Apr1g0478 Chr1 5875871 5878851 -
Dod Dod09g1787 Chr09 39497183 39499965 -
Lal Lal21g0656 Chr21 5016274 5019873 +
Lan Lan3g0722 Chr3 13254511 13259706 -
Lja Lja1g4527 Chr1 59051293 59054191 +
Mal Mal2g1537 Chr2 18430103 18432269 -
Mtr Mtr3g3322 Chr3 47151995 47154439 +
Sto Sto4g0317 Chr4 2455456 2460396 -
Tpr Tpr3g3118 Chr3 34302062 34304826 +
Vvi Vvi4g1449 Chr4 21559587 21561875 -
Vvi Vvi4g1450 Chr4 21596240 21597136 +
Vvi Vvi4g1451 Chr4 21608348 21610681 -
Vvi Vvi4g1452 Chr4 21627949 21629563 -
Vvi Vvi4g1453 Chr4 21645249 21647624 +