Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0860 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0861 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g02574 . Car02g02170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal8g0172 . . . . . . . Mtr5g3466 . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2079 . . . . . . Tsu05g04110 . . . . . . . . . . . .
Vvi19g0862 Acco10g1140 . Accr4g01610 . Adu01g00330 . . . . Aev01g0831 . Ahy11g0496 . Aip01g00492 Alju08g1648 . . Amo11g0295 . Apr9g1866 Arst1g00451 . Bach12g01331 . Bisa09g0219 . Bva12g02575 . . Car05g01192 Cca05g02055 . Dere04g1759 . . Dod05g0636 Enph1g0769 . Glsi08g0245 . Gma08g03133 Gma18g00678 . . Gso8g2793 Gso8g2793 . . . . . . . Lal11g0872 . . . . . . Lapu6g02456 . Lasa5g01236 . Lele01g1288 Lele02g1559 Lele03g1303 Lele04g1548 . . . . Lja6g1208 . Mal2g3436 Mal8g0175 Mepo3g04867 . . . Mibi05g1543 . Mtr3g1568 Mtr5g3464 Phac6g00808 . Phco11g01821 . Prci8g0919 . Psa5g3832 . . . . . . . Pumo1g00735 . Pvu6g0626 . Rops11g02523 . Seca6g02857 . Spst6g00009 . Ssu6g3612 . Sto9g2078 . Tpr3g3830 . Trre5g01068 . Tsu03g01011 Tsu05g04109 Vian6g00527 . Vifa2g01130 . Vimu2g02328 . Viun6g01013 . Vivi3g05210 . . .
Vvi19g0863 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0864 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g02501 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0866 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0867 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0868 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0869 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g0860 Chr19 9739588 9743061 +
Vvi Vvi19g0861 Chr19 9748021 9752206 -
Bva Bva12g02574 Chr12 19144911 19148488 -
Car Car02g02170 Chr02 51883127 51887237 +
Mal Mal8g0172 Chr8 2769021 2774708 -
Mtr Mtr5g3466 Chr5 43501209 43508716 +
Sto Sto9g2079 Chr9 24698436 24702474 +
Tsu Tsu05g04110 Chr05 51785828 51789866 +
Vvi Vvi19g0862 Chr19 9756858 9758305 -
Acco Acco10g1140 Chr10 25342926 25344689 +
Accr Accr4g01610 Chr4 16768539 16770330 -
Adu Adu01g00330 Chr01 4254284 4261885 +
Aev Aev01g0831 Chr01 8106195 8109217 -
Ahy Ahy11g0496 Chr11 7117323 7120085 -
Aip Aip01g00492 Chr01 6711617 6717727 -
Alju Alju08g1648 Chr08 13348912 13350687 -
Amo Amo11g0295 Chr11 4361009 4363348 -
Apr Apr9g1866 Chr9 27375905 27378179 +
Arst Arst1g00451 Chr1 4263243 4266188 +
Bach Bach12g01331 Chr12 9360922 9363048 -
Bisa Bisa09g0219 Chr09 3071221 3073069 +
Bva Bva12g02575 Chr12 19151452 19153907 -
Car Car05g01192 Chr05 54790260 54795019 +
Cca Cca05g02055 Chr05 40314573 40315951 +
Dere Dere04g1759 Chr04 20106792 20108676 +
Dod Dod05g0636 Chr05 9474527 9477390 -
Enph Enph1g0769 Chr1 33877417 33882799 +
Glsi Glsi08g0245 Chr08 2178896 2180664 +
Gma Gma08g03133 Chr08 48054503 48056991 -
Gma Gma18g00678 Chr18 6900793 6903649 -
Gso Gso8g2793 Chr8 45699488 45702336 -
Gso Gso8g2793 Chr8 45699488 45702336 -
Lal Lal11g0872 Chr11 11207309 11210286 +
Lapu Lapu6g02456 Chr6 24461537 24464851 -
Lasa Lasa5g01236 Chr5 336338307 336339850 +
Lele Lele01g1288 Chr01 7844286 7846344 -
Lele Lele02g1559 Chr02 19596496 19598266 -
Lele Lele03g1303 Chr03 7843133 7844936 -
Lele Lele04g1548 Chr04 20445900 20447700 -
Lja Lja6g1208 Chr6 35607786 35610469 -
Mal Mal2g3436 Chr2 52096620 52099001 -
Mal Mal8g0175 Chr8 2838809 2840188 -
Mepo Mepo3g04867 Chr3 60802764 60805872 +
Mibi Mibi05g1543 Chr05 18180142 18183019 -
Mtr Mtr3g1568 Chr3 27494130 27497203 +
Mtr Mtr5g3464 Chr5 43484711 43486556 +
Phac Phac6g00808 Chr6 12545437 12548867 +
Phco Phco11g01821 Chr11 14563385 14565665 -
Prci Prci8g0919 Chr8 6012150 6014240 -
Psa Psa5g3832 Chr5 301755625 301758367 -
Pumo Pumo1g00735 Chr1 11141737 11143986 -
Pvu Pvu6g0626 Chr6 17687024 17690047 +
Rops Rops11g02523 Chr11 42979987 42982389 -
Seca Seca6g02857 Chr6 93846369 93850163 -
Spst Spst6g00009 Chr6 380367 383484 +
Ssu Ssu6g3612 Chr6 79848454 79850374 +
Sto Sto9g2078 Chr9 24683621 24685330 +
Tpr Tpr3g3830 Chr3 42753728 42757159 -
Trre Trre5g01068 Chr5 7465120 7467375 -
Tsu Tsu03g01011 Chr03 9372283 9375526 -
Tsu Tsu05g04109 Chr05 51781085 51782930 +
Vian Vian6g00527 Chr6 20569326 20571166 +
Vifa Vifa2g01130 Chr2 304070633 304072387 +
Vimu Vimu2g02328 Chr2 18675305 18675913 -
Viun Viun6g01013 Chr6 19565753 19568307 +
Vivi Vivi3g05210 Chr3 104865196 104866885 -
Vvi Vvi19g0863 Chr19 9762238 9764184 +
Vvi Vvi19g0864 Chr19 9782955 9783320 -
Bva Bva12g02501 Chr12 18753430 18756143 +
Vvi Vvi19g0865 Chr19 9794630 9802189 +
Vvi Vvi19g0866 Chr19 9811973 9814352 +
Vvi Vvi19g0867 Chr19 9840084 9840929 +
Vvi Vvi19g0868 Chr19 9882315 9882924 -
Vvi Vvi19g0869 Chr19 9888097 9888288 +