Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0870 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0871 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0873 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0874 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0875 . . . . . . . . Aev07g0097 . Ahy17g0181 . Aip07g00123 . . . . . . . Arst1g04064 . . . . . . . . . . . . . Dod08g0119 . . . . . . Gma18g00715 . . . . . . . . . . . . . . . . . . . . Lasa5g00346 . . . . . . . . . . . . . . . . . . . . . . . Phco11g01866 . . . . . Pste7g01443 . . . . . Pumo1g00784 . Pvu6g0592 . Rops2g02065 . . . . . . . . . . . . . . . Vian6g00479 . . . Vimu2g02383 . Viun6g00947 . . . . .
Vvi19g0876 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0877 . . . . . . . . . Aev01g0832 . Ahy11g0498 . Aip01g00495 . . . Amo11g0297 . . . . . . . . Bva12g02578 . . . . . . . . . . . . . . . . . . . . . . . . Lal3g0755 . . . . . . . . . . . . . . . . . . . . Lja6g1209 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0878 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja6g1211 . . . . . . . . . . . . . . . . . Psa5g3833 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0879 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Lasa Lasa5g00346 Chr5 15409599 15412433 +
Vvi Vvi19g0870 Chr19 9922208 9922814 -
Vvi Vvi19g0871 Chr19 9933098 9933415 +
Vvi Vvi19g0872 Chr19 9955476 9955631 +
Vvi Vvi19g0873 Chr19 9975327 9975956 -
Vvi Vvi19g0874 Chr19 9981692 9982252 +
Vvi Vvi19g0875 Chr19 9994295 9997003 -
Aev Aev07g0097 Chr07 586781 590045 -
Ahy Ahy17g0181 Chr17 1827262 1830253 -
Aip Aip07g00123 Chr07 943720 950857 -
Arst Arst1g04064 Chr1 102548768 102550530 +
Dod Dod08g0119 Chr08 1299042 1302606 -
Gma Gma18g00715 Chr18 7492514 7495838 +
Lasa Lasa5g00346 Chr5 15409599 15412433 +
Phco Phco11g01866 Chr11 14994506 15001424 +
Pste Pste7g01443 Chr7 13215456 13225252 -
Pumo Pumo1g00784 Chr1 11668624 11685557 +
Pvu Pvu6g0592 Chr6 17298018 17300130 -
Rops Rops2g02065 Chr2 32818971 32821212 +
Vian Vian6g00479 Chr6 19649048 19659546 -
Vimu Vimu2g02383 Chr2 19414686 19418694 +
Viun Viun6g00947 Chr6 19114473 19121728 -
Vvi Vvi19g0876 Chr19 10015288 10018128 +
Vvi Vvi19g0877 Chr19 10028999 10030110 -
Aev Aev01g0832 Chr01 8114463 8118245 -
Ahy Ahy11g0498 Chr11 7265842 7269400 -
Aip Aip01g00495 Chr01 6876887 6880063 -
Amo Amo11g0297 Chr11 4520545 4523866 -
Bva Bva12g02578 Chr12 19158938 19162562 -
Lal Lal3g0755 Chr3 6506050 6509813 -
Lja Lja6g1209 Chr6 35625138 35628584 -
Vvi Vvi19g0878 Chr19 10049239 10051205 -
Lja Lja6g1211 Chr6 35640606 35642678 -
Psa Psa5g3833 Chr5 301817611 301820105 -
Vvi Vvi19g0879 Chr19 10110616 10112213 -
Lja Lja6g1211 Chr6 35640606 35642678 -