Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01662 . . . . . . . . . . . . . . . . . .
Pvu11g1529 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1530 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1531 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1532 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1533 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1534 . . . Aed5g1269 . . . . . . . . . . . . . . . . . . . . . . . . . . Lan8g1399 . . . . . . . Lja3g2459 . . . . . . . . . . . . . . . . Tpr7g2106 . Tsu02g03096 . . . . . .
Pvu11g1535 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1536 . . . . . . . . . . . . . . . . Car06g01878 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa7g3654 . . . . . . . . . . . . . . . Vra2g1188
Pvu11g1537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa4g01595 . . . . Lja3g2454 . . . . . . Phco9g01669 . . . . . . . . . . . . . . Vimu5g00419 . . Vra2g1329
   
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Select Species Gene Chromosome Start End Strand
Car Car06g01878 Chr06 18726320 18728138 +
Tsu Tsu02g03096 Chr02 34536841 34539362 -
Pvu Pvu11g1528 Chr11 38225417 38226008 -
Phco Phco9g01662 Chr9 39234877 39238445 +
Pvu Pvu11g1529 Chr11 38227429 38227560 -
Pvu Pvu11g1530 Chr11 38229976 38230448 -
Pvu Pvu11g1531 Chr11 38256277 38256748 -
Pvu Pvu11g1532 Chr11 38260638 38261141 -
Pvu Pvu11g1533 Chr11 38292949 38293173 -
Pvu Pvu11g1534 Chr11 38427431 38429252 +
Aed Aed5g1269 Chr5 11807648 11809741 -
Lan Lan8g1399 Chr8 20847143 20848537 +
Lja Lja3g2459 Chr3 30683388 30684899 -
Tpr Tpr7g2106 Chr7 26769932 26771980 +
Tsu Tsu02g03096 Chr02 34536841 34539362 -
Pvu Pvu11g1535 Chr11 38470857 38471373 -
Pvu Pvu11g1536 Chr11 38544967 38547407 +
Car Car06g01878 Chr06 18726320 18728138 +
Psa Psa7g3654 Chr7 308322964 308330533 +
Vra Vra2g1188 Chr2 15977563 15979299 -
Pvu Pvu11g1537 Chr11 38590690 38602461 -
Lasa Lasa4g01595 Chr4 253418123 253421423 -
Lja Lja3g2454 Chr3 30568566 30572899 +
Phco Phco9g01669 Chr9 39403134 39415119 -
Vimu Vimu5g00419 Chr5 3984698 3993157 +
Vra Vra2g1329 Chr2 21169851 21178140 +