Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g1441 . . Adu06g00946 Aed4g0410 Aev06g1269 Ahy16g0371 Ahy6g0958 Aip06g00344 . Amo16g0161 . . Arst6g01251 . . Bva04g02221 . Cca03g02000 . Dod01g2288 . . Gma19g01358 Gma03g01301 Gso19g1196 Gso3g1197 . . . . . . . . . . . . . . . . Mibi02g1058 . . . . . . Pumo5g02622 . . . Ssu4g1445 Sto8g1268 . . . . . . . . Vra3g0229
Pvu1g1442 Acco02g1177 Accr2g02566 Adu06g00947 Aed4g0409 Aev06g1268 Ahy16g0369 Ahy6g0959 Aip06g00343 Alju01g1159 Amo16g0160 . Apr4g1179 Arst6g01253 Bach8g01113 Bisa03g2312 Bva04g02222 Car03g02142 Cca03g02001 Dere01g2481 Dod01g2291 Enph2g0906 Glsi02g2390 Gma19g01359 Gma03g01302 Gso19g1197 Gso3g1198 . . . . . . Lapu1g00126 Lasa3g02853 Lele05g0902 Lele06g0762 Lele07g0941 Lele08g0761 Lja1g1251 Mal3g3573 Mepo3g02900 Mesa25g01231 Mibi02g1059 Mtr7g2683 Phac1g01929 Phco2g01587 Prci1g3229 Psa3g1642 Pste5g00435 Pumo5g02623 Rops8g02859 Seca8g04907 Spst1g03338 Ssu4g1442 Sto8g1267 Tpr6g1556 Trre13g03529 Tsu07g03411 Vian2g01983 . Vimu6g02984 Viun1g01802 Vivi6g04538 Vra3g0228
Pvu1g1443 Acco02g1180 Accr2g02564 Adu06g00949 Aed4g0408 Aev06g1267 Ahy16g0367 Ahy6g0961 Aip06g00342 Alju01g1161 Amo16g0158 . Apr4g1178 Arst6g01255 . Bisa03g2309 Bva04g02223 Car03g02143 Cca03g02002 Dere01g2483 Dod01g2293 Enph2g0908 Glsi02g2392 Gma19g01360 Gma03g01303 Gso19g1198 Gso3g1199 . . . . . . Lapu1g00125 Lasa3g02854 Lele05g0904 Lele06g0764 Lele07g0943 Lele08g0763 Lja1g1249 Mal3g3575 Mepo3g02901 Mesa25g01230 . Mtr7g2684 Phac1g01930 Phco2g01588 Prci1g3226 Psa3g1639 Pste5g00440 Pumo5g02624 Rops8g02860 Seca2g04095 Spst1g03337 Ssu4g1441 Sto8g1265 Tpr6g1558 Trre13g03551 Tsu07g03413 Vian2g01984 Vifa5g02417 Vimu6g02982 Viun1g01803 Vivi6g04539 Vra3g0227
Pvu1g1444 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g01590 . . . . . . . . . . . . . . . . . .
Pvu1g1445 . . . . Aev06g1266 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr6g3636 . . . . . . . Vra3g0226
Pvu1g1446 . . Adu06g00951 . . Ahy16g0366 Ahy6g0962 Aip06g00341 . . . . . . . . Car03g02144 Cca03g02003 . Dod01g2295 . . Gma19g01361 . Gso19g1199 . . . . . . . . . . . . . . Mal3g3576 Mepo3g02902 . . Mtr7g2685 . . . . . . . . . . . Tpr6g1560 . Tsu07g03414 . . . . . Vra3g0225
Pvu1g1447 . . . Aed4g0406 Aev06g1265 Ahy16g0365 . Aip06g00340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu4g1440 . . . . . . . . . Vra3g0224
Pvu1g1448 . . Adu06g00952 . . . Ahy6g0964 . . . . . Arst6g01256 . . . Car03g02145 Cca03g02004 . Dod01g2296 . . Gma19g01362 Gma03g01304 . Gso3g1200 . . . . . . . . . . . . . Mal3g3577 . . . Mtr7g2686 . . Prci1g3224 . . Pumo5g02625 . . . . Sto8g1264 Tpr6g1561 . Tsu07g03416 . . Vimu6g02981 . . .
Pvu1g1449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1450 . . . Aed4g0405 Aev06g1264 Ahy16g0364 . Aip06g00339 . Amo16g0157 . Apr4g1176 . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g1247 . . . . . . . Prci1g3223 . . . . . . Ssu4g1439 Sto8g1263 . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g1441 Chr1 38609084 38612821 +
Adu Adu06g00946 Chr06 11730325 11734159 +
Aed Aed4g0410 Chr4 2914129 2918556 -
Aev Aev06g1269 Chr06 8445065 8448007 -
Ahy Ahy16g0371 Chr16 7246842 7250705 -
Ahy Ahy6g0958 Chr6 12639781 12643789 +
Aip Aip06g00344 Chr06 4007523 4011246 -
Amo Amo16g0161 Chr16 2141538 2145399 -
Arst Arst6g01251 Chr6 11760194 11764079 +
Bva Bva04g02221 Chr04 21224858 21228120 +
Cca Cca03g02000 Chr03 40115277 40121202 +
Dod Dod01g2288 Chr01 60819067 60819855 +
Gma Gma19g01358 Chr19 42898441 42901962 +
Gma Gma03g01301 Chr03 39185336 39188807 +
Gso Gso19g1196 Chr19 40459437 40463223 +
Gso Gso3g1197 Chr3 37636099 37639894 +
Mibi Mibi02g1058 Chr02 10465983 10468887 +
Pumo Pumo5g02622 Chr5 72232945 72236767 +
Ssu Ssu4g1445 Chr4 24022563 24023981 -
Sto Sto8g1268 Chr8 7969208 7972050 -
Vra Vra3g0229 Chr3 2569334 2573147 -
Pvu Pvu1g1442 Chr1 38622966 38625891 +
Acco Acco02g1177 Chr02 8655587 8657713 +
Accr Accr2g02566 Chr2 61126713 61128838 -
Adu Adu06g00947 Chr06 11739673 11743472 +
Aed Aed4g0409 Chr4 2903782 2907446 -
Aev Aev06g1268 Chr06 8430301 8433671 -
Ahy Ahy16g0369 Chr16 7224047 7228598 -
Ahy Ahy6g0959 Chr6 12661315 12665701 +
Aip Aip06g00343 Chr06 3987675 3990453 -
Alju Alju01g1159 Chr01 8990232 8992326 +
Amo Amo16g0160 Chr16 2120094 2123039 -
Apr Apr4g1179 Chr4 10210833 10214980 -
Arst Arst6g01253 Chr6 11769574 11772140 +
Bach Bach8g01113 Chr8 7426319 7429111 -
Bisa Bisa03g2312 Chr03 33787452 33790045 -
Bva Bva04g02222 Chr04 21230932 21233798 +
Car Car03g02142 Chr03 67652741 67655181 +
Cca Cca03g02001 Chr03 40130575 40133282 +
Dere Dere01g2481 Chr01 39523017 39526891 +
Dod Dod01g2291 Chr01 60849117 60851546 +
Enph Enph2g0906 Chr2 7341770 7345561 +
Glsi Glsi02g2390 Chr02 74129826 74131979 -
Gma Gma19g01359 Chr19 42912228 42915776 +
Gma Gma03g01302 Chr03 39201065 39204811 +
Gso Gso19g1197 Chr19 40472880 40476573 +
Gso Gso3g1198 Chr3 37652011 37655674 +
Lapu Lapu1g00126 Chr1 6173522 6176663 -
Lasa Lasa3g02853 Chr3 599313044 599314638 +
Lele Lele05g0902 Chr05 5571131 5573213 +
Lele Lele06g0762 Chr06 4706427 4708506 +
Lele Lele07g0941 Chr07 5644295 5646378 +
Lele Lele08g0761 Chr08 4752306 4754321 +
Lja Lja1g1251 Chr1 12881581 12885176 -
Mal Mal3g3573 Chr3 112943473 112945649 +
Mepo Mepo3g02900 Chr3 39150240 39152500 +
Mesa Mesa25g01231 Chr25 14826455 14828482 -
Mibi Mibi02g1059 Chr02 10478643 10480651 +
Mtr Mtr7g2683 Chr7 43566655 43569751 +
Phac Phac1g01929 Chr1 29052999 29056169 +
Phco Phco2g01587 Chr2 46186129 46188621 +
Prci Prci1g3229 Chr1 50020135 50023103 -
Psa Psa3g1642 Chr3 146998688 147000712 -
Pste Pste5g00435 Chr5 2870547 2873275 +
Pumo Pumo5g02623 Chr5 72245587 72249297 +
Rops Rops8g02859 Chr8 64341921 64344684 +
Seca Seca8g04907 Chr8 136011474 136014855 +
Spst Spst1g03338 Chr1 41998832 42001273 -
Ssu Ssu4g1442 Chr4 23982627 23984774 -
Sto Sto8g1267 Chr8 7961010 7962818 -
Tpr Tpr6g1556 Chr6 16860433 16863110 +
Trre Trre13g03529 Chr13 43090271 43092438 +
Tsu Tsu07g03411 Chr07 40534554 40536183 +
Vian Vian2g01983 Chr2 39448992 39451467 +
Vimu Vimu6g02984 Chr6 26328777 26329451 -
Viun Viun1g01802 Chr1 29787150 29790140 +
Vivi Vivi6g04538 Chr6 147241749 147245074 +
Vra Vra3g0228 Chr3 2555703 2558754 -
Pvu Pvu1g1443 Chr1 38632696 38634058 +
Acco Acco02g1180 Chr02 8669063 8671005 +
Accr Accr2g02564 Chr2 61117679 61119118 -
Adu Adu06g00949 Chr06 11756421 11758558 +
Aed Aed4g0408 Chr4 2900037 2901702 -
Aev Aev06g1267 Chr06 8420944 8426577 -
Ahy Ahy16g0367 Chr16 7208527 7210665 -
Ahy Ahy6g0961 Chr6 12679270 12681402 +
Aip Aip06g00342 Chr06 3974502 3979418 -
Alju Alju01g1161 Chr01 8997754 8999178 +
Amo Amo16g0158 Chr16 2103201 2105221 -
Apr Apr4g1178 Chr4 10202970 10204002 -
Arst Arst6g01255 Chr6 11786433 11788484 +
Bisa Bisa03g2309 Chr03 33766144 33767610 -
Bva Bva04g02223 Chr04 21233799 21240679 +
Car Car03g02143 Chr03 67665340 67666783 +
Cca Cca03g02002 Chr03 40136406 40138187 +
Dere Dere01g2483 Chr01 39531664 39533082 +
Dod Dod01g2293 Chr01 60864985 60867309 +
Enph Enph2g0908 Chr2 7349942 7352132 +
Glsi Glsi02g2392 Chr02 74142649 74144170 +
Gma Gma19g01360 Chr19 42921307 42922390 +
Gma Gma03g01303 Chr03 39213329 39214323 +
Gso Gso19g1198 Chr19 40481799 40483135 +
Gso Gso3g1199 Chr3 37664090 37665342 +
Lapu Lapu1g00125 Chr1 6165212 6166081 -
Lasa Lasa3g02854 Chr3 599393783 599394740 +
Lele Lele05g0904 Chr05 5579157 5583565 +
Lele Lele06g0764 Chr06 4715477 4716833 +
Lele Lele07g0943 Chr07 5651864 5653249 +
Lele Lele08g0763 Chr08 4759672 4761064 +
Lja Lja1g1249 Chr1 12862670 12863982 -
Mal Mal3g3575 Chr3 112966904 112968323 +
Mepo Mepo3g02901 Chr3 39156218 39158333 +
Mesa Mesa25g01230 Chr25 14816487 14818108 -
Mtr Mtr7g2684 Chr7 43581720 43583865 +
Phac Phac1g01930 Chr1 29063439 29064977 +
Phco Phco2g01588 Chr2 46196467 46197187 +
Prci Prci1g3226 Chr1 50012168 50014335 -
Psa Psa3g1639 Chr3 146718494 146720097 -
Pste Pste5g00440 Chr5 2906956 2908246 +
Pumo Pumo5g02624 Chr5 72252953 72254115 +
Rops Rops8g02860 Chr8 64360593 64362561 +
Seca Seca2g04095 Chr2 123784136 123785595 +
Spst Spst1g03337 Chr1 41993283 41994009 -
Ssu Ssu4g1441 Chr4 23956893 23957630 -
Sto Sto8g1265 Chr8 7954879 7956321 -
Tpr Tpr6g1558 Chr6 16874834 16877427 +
Trre Trre13g03551 Chr13 43270570 43272191 +
Tsu Tsu07g03413 Chr07 40547554 40549694 +
Vian Vian2g01984 Chr2 39458701 39459426 +
Vifa Vifa5g02417 Chr5 799080798 799081798 +
Vimu Vimu6g02982 Chr6 26321948 26322802 -
Viun Viun1g01803 Chr1 29794814 29796137 +
Vivi Vivi6g04539 Chr6 147254796 147256324 +
Vra Vra3g0227 Chr3 2550667 2552017 -
Pvu Pvu1g1444 Chr1 38656504 38657073 -
Phco Phco2g01590 Chr2 46210844 46211047 -
Pvu Pvu1g1445 Chr1 38679419 38681217 -
Aev Aev06g1266 Chr06 8414799 8416767 -
Tpr Tpr6g3636 Chr6 39636773 39638680 +
Vra Vra3g0226 Chr3 2523220 2525200 -
Pvu Pvu1g1446 Chr1 38717702 38719583 +
Adu Adu06g00951 Chr06 11768214 11772348 +
Ahy Ahy16g0366 Chr16 7197865 7200865 -
Ahy Ahy6g0962 Chr6 12686186 12690460 +
Aip Aip06g00341 Chr06 3926101 3929654 -
Car Car03g02144 Chr03 67682225 67684717 +
Cca Cca03g02003 Chr03 40145763 40147832 +
Dod Dod01g2295 Chr01 60898266 60901413 +
Gma Gma19g01361 Chr19 42937970 42940032 +
Gso Gso19g1199 Chr19 40498627 40500785 +
Mal Mal3g3576 Chr3 113001468 113003204 +
Mepo Mepo3g02902 Chr3 39174650 39177043 +
Mtr Mtr7g2685 Chr7 43593828 43597068 +
Tpr Tpr6g1560 Chr6 16901423 16904451 +
Tsu Tsu07g03414 Chr07 40557856 40560456 +
Vra Vra3g0225 Chr3 2520122 2521910 -
Pvu Pvu1g1447 Chr1 38739778 38741554 +
Aed Aed4g0406 Chr4 2893552 2895490 -
Aev Aev06g1265 Chr06 8408301 8410141 -
Ahy Ahy16g0365 Chr16 7168109 7173374 -
Aip Aip06g00340 Chr06 3923907 3925540 -
Ssu Ssu4g1440 Chr4 23935600 23937462 -
Vra Vra3g0224 Chr3 2517356 2519566 -
Pvu Pvu1g1448 Chr1 38759534 38763001 +
Adu Adu06g00952 Chr06 11789326 11790961 +
Ahy Ahy6g0964 Chr6 12707328 12710760 +
Arst Arst6g01256 Chr6 11798181 11802234 +
Car Car03g02145 Chr03 67686535 67688837 +
Cca Cca03g02004 Chr03 40148679 40150961 +
Dod Dod01g2296 Chr01 60923314 60925152 +
Gma Gma19g01362 Chr19 42946451 42948643 +
Gma Gma03g01304 Chr03 39220061 39220435 +
Gso Gso3g1200 Chr3 37670840 37672178 +
Mal Mal3g3577 Chr3 113007013 113009134 +
Mtr Mtr7g2686 Chr7 43599540 43601954 +
Prci Prci1g3224 Chr1 50009585 50011492 -
Pumo Pumo5g02625 Chr5 72284137 72286285 +
Sto Sto8g1264 Chr8 7951726 7953632 -
Tpr Tpr6g1561 Chr6 16907954 16910371 +
Tsu Tsu07g03416 Chr07 40569103 40571245 +
Vimu Vimu6g02981 Chr6 26299984 26301699 -
Pvu Pvu1g1449 Chr1 38763779 38764305 -
Pvu Pvu1g1450 Chr1 38768965 38770901 +
Aed Aed4g0405 Chr4 2890650 2892761 -
Aev Aev06g1264 Chr06 8403922 8405663 -
Ahy Ahy16g0364 Chr16 7163923 7166195 -
Aip Aip06g00339 Chr06 3920518 3922367 -
Amo Amo16g0157 Chr16 2092713 2095435 -
Apr Apr4g1176 Chr4 10127716 10134023 -
Lja Lja1g1247 Chr1 12852091 12856200 -
Prci Prci1g3223 Chr1 50000655 50002623 -
Ssu Ssu4g1439 Chr4 23932260 23934225 -
Sto Sto8g1263 Chr8 7944702 7946329 -
Seca Seca8g04907 Chr8 136011474 136014855 +
Tpr Tpr6g3636 Chr6 39636773 39638680 +