Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02223 ATGTCGAATTTATACGGGGATTTCAATCAGAAGATTGATTATGTATTCAAAGTGGTGTTGATTGGGGACTCTGCAGTTGGGAAAACTCAGCTGCTCGCACGCTTTGCGAGGAATGAATTCAGCGTGGATTCCAAAGCGACTATTGGGGTTGAATTTCAGACAAAAACGCTCGTTATTGATAACAAGACGGTAAAGGCACAGATTTGGGATACTGCTGGACAAGAAAGGTACAGGGCAGTTACTAGTGCATATTATCGAGGAGCTGTTGGGGCAATGTTAGTTTATGACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGGTGGTTAGAAGAACTAAGAGGTCACgctgataaaaatattgttatcaTGCTTATTGGCAATAAGTGTGATCTGGGAACTCTTAGAGCAGTTCCAACCGAAGACGCCCAGGAGTTTGCGCAAAGAGAGAACCTATTCTTTATGGAGACATCAGCACTTGAGGCCACTAATGTTGAAACGGCCTTTCTGACTATTCTAACAGAGATATACAGAATTATCAGCAAGAAAACCCTTAGTGCCAATGGCGGTGCAGATTCCATTGATCATTCAGGCCTTCTCAAGGGAACCAGGATAATTGTTCCTAACGATGCACAGGATCCAAAGAAGGGTTCCCATTCCTCTCCtcgtttttattttacacGCAAGAGAGTGCCTCCACCATCACGAAACCCTTTCATTTTCAAGGTGAACTCAGGTATGCCGGAATCCAGAGACAGATTGTCAAGGCCCGACGAGGCGACTTTGTTTGGTCGCCGGCAAACTGATCTGATTGGTGTACTAGATGACGAAGTGGAGTTGCATTTATTTGGATCCACTCCAAGGCGAGAGACTACTGTTTCGACAGTGACACGCAGAGCAACCGGATTTGGTGCTACACGTCCTAGTGGGGTCGTTAGGGGTACTATTGGAACTACAAGGATCACGGTTGGCCGTGACCGTGGCCGTGGCCGTAACCTGCGTAGGTCACCTGCTTTGGGCGCGGAGAACAGTGGACCAGGAACTGCCCGGCGTGGAAGGGTTCGTCCATCACATTCTGTGCTACCCTCTTGGTACCCAAGAACCCCTCTCCGAGATATTACTGCAGTTGTGAGGGCAATTGAAACGAGGAGAGCTCGCTTGGGAGAGATCGAAGGCCAACAAACTGGAAGCCCTTTGCCTGCCGATCTTTCTGTCTCATCATCTGGTGCTCAATTCGAGCACAGTAATTCTGTGGCCTCTCCAAAATCCAATATTGCAGTCAAGCTTCGGACACCAGCAAATAGTAAAGTGCCCAAGATAGTACTTGATATCCCAAACAATGCAGAGGGAGATGAGTCCCTGACACCTCAGAGGAAACTCCTCAACTCTATTGATGCTGTTGAGAAAGACgtaaaagagaaattacaGAAATTAAAGAGAACACCAGGTGCGAAGAaagcagagagagaaaagaaggttCGCACATTGATGTCTATGAGGTA 1502 0.4527 MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVIDNKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGTLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKTLSANGGADSIDHSGLLKGTRIIVPNDAQDPKKGSHSSPRFYFTRKRVPPPSRNPFIFKVNSGMPESRDRLSRPDEATLFGRRQTDLIGVLDDEVELHLFGSTPRRETTVSTVTRRATGFGATRPSGVVRGTIGTTRITVGRDRGRGRNLRRSPALGAENSGPGTARRGRVRPSHSVLPSWYPRTPLRDITAVVRAIETRRARLGEIEGQQTGSPLPADLSVSSSGAQFEHSNSVASPKSNIAVKLRTPANSKVPKIVLDIPNNAEGDESLTPQRKLLNSIDAVEKDVKEKLQKLKRTPGAKKAEREKKVRTLMSMR 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02223 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 183 IPR027417 -
Bva04g02223 500 ProSiteProfiles small GTPase Ras family profile. 10 263 IPR001806 GO:0003924|GO:0005525
Bva04g02223 500 SMART rab_sub_5 16 179 - -
Bva04g02223 500 SMART rho_sub_3 18 175 IPR001806 GO:0003924|GO:0005525
Bva04g02223 500 Gene3D - 8 197 IPR027417 -
Bva04g02223 500 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 211 - -
Bva04g02223 500 SMART ran_sub_2 21 215 - -
Bva04g02223 500 PANTHER - 1 211 - -
Bva04g02223 500 MobiDBLite consensus disorder prediction 209 229 - -
Bva04g02223 500 CDD Rab11_like 13 177 - -
Bva04g02223 500 MobiDBLite consensus disorder prediction 327 360 - -
Bva04g02223 500 ProSiteProfiles small GTPase Rab1 family profile. 11 212 - -
Bva04g02223 500 TIGRFAM small_GTP: small GTP-binding protein domain 15 172 IPR005225 GO:0005525
Bva04g02223 500 SMART ras_sub_4 13 179 - -
Bva04g02223 500 SMART arf_sub_2 1 181 - -
Bva04g02223 500 Pfam Ras family 17 177 IPR001806 GO:0003924|GO:0005525
Bva04g02223 500 PRINTS Transforming protein P21 ras signature 39 55 - -
Bva04g02223 500 PRINTS Transforming protein P21 ras signature 154 176 - -
Bva04g02223 500 PRINTS Transforming protein P21 ras signature 57 79 - -
Bva04g02223 500 PRINTS Transforming protein P21 ras signature 16 37 - -
Bva04g02223 500 PRINTS Transforming protein P21 ras signature 119 132 - -
Bva04g02223 500 MobiDBLite consensus disorder prediction 388 407 - -
Bva04g02223 500 MobiDBLite consensus disorder prediction 479 500 - -
Bva04g02223 500 ProSiteProfiles small GTPase Rho family profile. 9 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02223 Bva-Chr4 21233799 21240679 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02223 K07904 - cpap:110811788 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02223 04 21233799 21240679 Bva04g02223 04 21233799 21240679 ECH