Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00342 ATGACGAAGATTGATTACGTGTTCAAGGTGGTTTTGATCGGTGACTCCTCTGTTGGCAAAACGCAACTTCTTGCGCGTTTCGCCAGGAATGAATTTAGTGCCGATTCTAAAGCAACAATTGGTGTTGAATTTCAGACCAAAACTCTCATCATTGATACCAAGACCATCAAGGCTCAGATATGGGATACCGCTGGCCAAGAAAGGTACCGAGCAGTTACTAGTGCATACTATCGAGGTGCTCTTGGAGCAATGATAGTTTATGACATGGCTAAGAGGCAATCGTTCGAACACATGGCTAAGTGGTTACAAGAACTGAGGGACCACGCTGACAAGAACATTGTTGTGATGCTTATTGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAGGATTTTGCACACAGGGAGAACCTCTTCTTCATGGAGACATCAGCTCTTGATTCCACGAATGTTGAAACTTGCTTTATCACCATTCTAACTGAGATATACAAAATTAATGCCAAGAAACCACTTTCTGGTGCTGATGATATCAATGGTACTAGTCTCAGGGGAACCACCATAATTATTAATAACCATGATGATGATGCTGGAAAAGCACTTGCTTCTCCCTCCGTTATTACTACTACTACTCCTGCTCAACACAGAGAGAGAAACAGCCGAAACCCTAGGCCATGCCGGAAGCAAGAGATCGTCGTTCCACTGCCGTCGACATCGCCGCTCTATTTGCACGCCGGCGAGCTTTACTCCACGGCGTACTCTTGGACGACGAACTTGACTCCAGCGTCTTCGGATCCGCTCGGAGGCAACCGCCCGTCGAGAAGTGGTGGACGGCGAGTAGTGGGAAGGGGTCGTGGTCGTGGTCGCGGTAGTTCTTCCCGGAGCGTGCTACCTTCTTGGTACCCTAGAACCCCTCTTAGGGACATTTCTTCTGTTGTGCGCGCAATTGAAAGGAGGAGAGCTCGGTTAGGAGAAATCGATGGCCAGCAAACTGGGAATCCATTTCCGGCGGATCAGCTGTTTCCTGATCCTTCTGTGTCCTCAGATAATGCTCAACTCTCTGAGATCACCCCAAAGCCGGCATCAGGTGTTAAGCTCCGAACACCCAGCGGCAAGGTTCCGAAAATTCTGCTCGACATTGCCAATCAGACCGAAGGGGAGCAGTCAGAGTTAACTCCACAGATGAAGCTTCTCAATTCAATTGATAGTGTTGAGAAAGTGGTGAAGGAGGAGCTGCAGAGACTTAAGAGAACACCAAGCGCCAAGAAAGCCGAAAGAGAAAAACGAGTTCGTACATTGATGTCCATGAGGAGGAGAGGGAAGAACTTTTGTTGCAAAATCATCGTCTGA 1449 0.4382 MTKIDYVFKVVLIGDSSVGKTQLLARFARNEFSADSKATIGVEFQTKTLIIDTKTIKAQIWDTAGQERYRAVTSAYYRGALGAMIVYDMAKRQSFEHMAKWLQELRDHADKNIVVMLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDFAHRENLFFMETSALDSTNVETCFITILTEIYKINAKKPLSGADDINGTSLRGTTIIINNHDDDAGKALASPSVITTTTPAQHRERNSRNPRPCRKQEIVVPLPSTSPLYLHAGELYSTAYSWTTNLTPASSDPLGGNRPSRSGGRRVVGRGRGRGRGSSSRSVLPSWYPRTPLRDISSVVRAIERRRARLGEIDGQQTGNPFPADQLFPDPSVSSDNAQLSEITPKPASGVKLRTPSGKVPKILLDIANQTEGEQSELTPQMKLLNSIDSVEKVVKEELQRLKRTPSAKKAEREKRVRTLMSMRRRGKNFCCKIIV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00342 482 ProSiteProfiles small GTPase Ras family profile. 1 241 IPR001806 GO:0003924|GO:0005525
Aip06g00342 482 CDD Rab11_like 5 197 - -
Aip06g00342 482 MobiDBLite consensus disorder prediction 356 396 - -
Aip06g00342 482 ProSiteProfiles small GTPase Rab1 family profile. 3 248 - -
Aip06g00342 482 SMART rho_sub_3 10 195 IPR001806 GO:0003924|GO:0005525
Aip06g00342 482 PRINTS Transforming protein P21 ras signature 174 196 - -
Aip06g00342 482 PRINTS Transforming protein P21 ras signature 8 29 - -
Aip06g00342 482 PRINTS Transforming protein P21 ras signature 31 47 - -
Aip06g00342 482 PRINTS Transforming protein P21 ras signature 49 71 - -
Aip06g00342 482 PRINTS Transforming protein P21 ras signature 111 124 - -
Aip06g00342 482 SMART ran_sub_2 13 211 - -
Aip06g00342 482 SMART ras_sub_4 5 199 - -
Aip06g00342 482 PANTHER - 3 121 - -
Aip06g00342 482 MobiDBLite consensus disorder prediction 292 334 - -
Aip06g00342 482 Coils Coil 164 165 - -
Aip06g00342 482 PANTHER BNAA05G26830D PROTEIN 164 233 - -
Aip06g00342 482 Gene3D - 2 215 IPR027417 -
Aip06g00342 482 PANTHER BNAA05G26830D PROTEIN 3 121 - -
Aip06g00342 482 PANTHER - 164 233 - -
Aip06g00342 482 TIGRFAM small_GTP: small GTP-binding protein domain 7 120 IPR005225 GO:0005525
Aip06g00342 482 SMART rab_sub_5 8 199 - -
Aip06g00342 482 Pfam Ras family 9 197 IPR001806 GO:0003924|GO:0005525
Aip06g00342 482 MobiDBLite consensus disorder prediction 376 390 - -
Aip06g00342 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 207 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00342 Aip-Chr6 3974502 3979418 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00342 K07904 - adu:107492916 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00342 06 3974502 3979418 Aip06g00342 06 3974502 3979418 ECH