Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2218 ATGTGGCCATTCGGCAGGAAAGGGGCTTCTGGGTTTTCATCATCATCCACTGCTGAGCAAGTCACTGAAGGTCTTGATGGAACTGGTCTCACTGCCATTGTTACAGGAGCATCCAGTGGTATTGGCACTGAGACTACACGTGTACTTGCTTTGCGAGGTGTCCATGTGATCATGGGTGTGAGAAATATGGTTGCTGCTAAAGATGTCAAAGAAACCATACTCAAGGAGATTCCCTCTGCAAAAGTTGATGCCTTGGAATTAGATCTCAGTTCACTGGATTCTGTCAATAAATTTGCATCAGATTTTAAGTCTTCTGGTCTTCCGTTGAACATCTTGATAAACAACGCAGGAATTATGGCATGCCCTTTCAAGCTCTCTGCAGACAAAATTGAACTACAGTTCGCCACAAATCACTTAGGTCACTTTCTATTGACAAATCTTTTGTTGGACACTATGAAGAAAACTTCACGTAAAACTAAGAAAGAAGGAAGAATTGTTAATGTCTCTTCTGAGGCTCACCGGTTTGCATATTCTGAAGGAATCCGTTTTGACAAAATTAATGATAAGTCAAGTTACAGAGCCTGGGGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCGAATGAACTTTCAAGGCGTCTCAAGGAAGATGGGGTGGAGATTTCTGCAAATTCTCTTCATCCTGGAGCAATTACCACCAATCTTTTCCGTTATACTCCAATAAACGGTATAATTAATGTTATTGGTAGACTCGTTTTTAAAAACATCCCGCAGGGAGCAGCAACAACATGCTATGTAGCATTACACCCACAAGTGAAGGGAGTTAGTGGCAGGTATTTTTCAGACAGTAATGTGGCCCAACCAACCTCACTTGGGACTGATGCTGATTTGGCCAAGAAACTTTGGGATTTCAGCTTGAATTTGACCAAGTAA 939 0.4196 MWPFGRKGASGFSSSSTAEQVTEGLDGTGLTAIVTGASSGIGTETTRVLALRGVHVIMGVRNMVAAKDVKETILKEIPSAKVDALELDLSSLDSVNKFASDFKSSGLPLNILINNAGIMACPFKLSADKIELQFATNHLGHFLLTNLLLDTMKKTSRKTKKEGRIVNVSSEAHRFAYSEGIRFDKINDKSSYRAWGAYGQSKLANILHANELSRRLKEDGVEISANSLHPGAITTNLFRYTPINGIINVIGRLVFKNIPQGAATTCYVALHPQVKGVSGRYFSDSNVAQPTSLGTDADLAKKLWDFSLNLTK* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2218 312 Pfam short chain dehydrogenase 31 177 IPR002347 -
Vra8g2218 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 288 IPR036291 -
Vra8g2218 312 PANTHER RETINOL DEHYDROGENASE 2 312 - -
Vra8g2218 312 Gene3D - 22 312 - -
Vra8g2218 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Vra8g2218 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Vra8g2218 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Vra8g2218 312 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 312 - -
Vra8g2218 312 CDD retinol-DH_like_SDR_c_like 29 304 - -
Vra8g2218 312 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Vra8g2218 312 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Vra8g2218 312 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Vra8g2218 312 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2218 Vra-Chr8 40476695 40481417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2218 31 290 Acyl Lipid Metabolism Gene Families AT1G62610 27.599 1.02e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2218 - - gmx:100796920 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2218 8 40476695 40481417 Vra8g2218 8 40476695 40481417 ECH
Vra1g1822 1 34765251 34770552 Vra8g2218 8 40476695 40481417 PCT
Vra8g2218 8 40476695 40481417 Vra1g1823 1 34785264 34789585 PCT