Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1823 ATGTGTCCTTCTGGGTTTTCATCATCTTCCACAGCAGAAGAAGTTACTCTTGGAATCCATGGTGATGGTCTCACTGCAATTGTCACAGGAACAACGCATGGTATTGGCATTGAGACTGCAAGAGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGCAGTGAGAAATGTGGTTGCTGCAGAAGCTGTCAAAGAAGCAATCCTCAAAGAGATTCAAACAGCCAAAGTTGATGTCATGGAGTTAGATCTCAGTTCAATGGCATCTGTTAGAAAATTTGCATCAGAGTTCACTTCATCTGGTTTACCATTGAACATCTTGATAAACAACGCAGGGATAACTGCAACCCCTTTCTCACTGTCTAAAGACAACATCGAACTACAATTTGCCACAAATCACTTGGGCCATTTTCTTTTAACACATCTTTTATTGGATACTATGAAGAAAACTGCAAGTGTAAGCAAGAGAGAAGGAAGAATTGTGAATGTCTCCTCTGATGGTCACCAATATACATATCCTGAAGGAATTCGTTTTGATAGAATTAATGATCAATCAAGTTTCCAGCTGTGGCATGCATATGGACAATCAAAGCTTGCTAACATCTTACATGCCAACGAACTTGCAAGACGTCTTAAAGAAAATAAGGTAGATATTACAGCAAATTCTCTTCATCCAGGAGCAATTATAACCAATATTTATAAGCCAGAGATTAGTGGTGCTGTGCCAAGAGATTTATTGGATATGCTTGGCGATTACGCGTTGAAAAGTATTCAACAGGGAGCAGCAACGACATGCTATGTAGCTTTGAATCCACAAGTGAAGGGAATCAGTGGCGAGTACTTTTCAGATAATAATGTGGCTAAAGGAAGCTCACTGGCAAAGGACACTCATTTGGCTAAAGAACTCTGGGATTTCAGCATGAAGATAATTGATCAGAATACCCATGAATGA 948 0.3987 MCPSGFSSSSTAEEVTLGIHGDGLTAIVTGTTHGIGIETARVLALRGVHVIMAVRNVVAAEAVKEAILKEIQTAKVDVMELDLSSMASVRKFASEFTSSGLPLNILINNAGITATPFSLSKDNIELQFATNHLGHFLLTHLLLDTMKKTASVSKREGRIVNVSSDGHQYTYPEGIRFDRINDQSSFQLWHAYGQSKLANILHANELARRLKENKVDITANSLHPGAIITNIYKPEISGAVPRDLLDMLGDYALKSIQQGAATTCYVALNPQVKGISGEYFSDNNVAKGSSLAKDTHLAKELWDFSMKIIDQNTHE* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1823 315 CDD retinol-DH_like_SDR_c_like 23 302 - -
Vra1g1823 315 PANTHER RETINOL DEHYDROGENASE 3 310 - -
Vra1g1823 315 Pfam short chain dehydrogenase 25 173 IPR002347 -
Vra1g1823 315 Gene3D - 21 314 - -
Vra1g1823 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 285 IPR036291 -
Vra1g1823 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 101 112 IPR002347 -
Vra1g1823 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 165 IPR002347 -
Vra1g1823 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 192 211 IPR002347 -
Vra1g1823 315 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
Vra1g1823 315 PRINTS Glucose/ribitol dehydrogenase family signature 101 112 IPR002347 -
Vra1g1823 315 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Vra1g1823 315 PRINTS Glucose/ribitol dehydrogenase family signature 192 211 IPR002347 -
Vra1g1823 315 PRINTS Glucose/ribitol dehydrogenase family signature 215 232 IPR002347 -
Vra1g1823 315 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 3 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1823 Vra-Chr1 34785264 34789585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1823 27 240 Acyl Lipid Metabolism Gene Families AT3G55310 29.545 2.35e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1823 - - cam:101490020 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2218 8 40476695 40481417 Vra1g1823 1 34785264 34789585 PCT