Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1822 ATGTGGTGGCTGTTCGGAAGAACAAACGGTTCTGGTTTTTCATCTTCTTCTACTGCTGAGGAAGTCACTCAGGGGATCGATGGCAACAACCTTACTGCTATTGTTACAGGTGCAACCAGTGGTATTGGCGTTGAAACTGCTCGTGTTCTTGCGATGCGTGGTGTTCATGTAATAATGGGAGTCAGAAATTTGGTTACTGCAAAAGATGTTAAAGAAGGAATACTTAAGGAGATTCCTTCTGCTAAACTTGATTACATGGAATTAGACCTTAGTTCAATGGCATCTGTTCGAAAGTTTGCATCAAACTTCATTTCATCTGGCCTTCCATTAAACATTCTTATAAACAATGCAGGAATTTTCGCAGCCCCTTTCACTCTGTCTGAAGACAACATTGAACTGCAATTTGCCACAAATCACATTGGTCATTTCCTGTTAACAAATCTGTTGTTGGATACTATGAAGAAAACAGCTCACGAAACTAAGAAACAAGGAAGAGTCGTTAATGTCTCCTCTATAGTTCATCTATTACCGAGAGGAATCCGTTTTGATCAAATTAATGATCCATCAAGTTACCATATGTGGTTTACATATGGACAATCAAAGCTGGCTAACGTCTTACATGCCAATGAACTTGCAAGACGATTCAAGGAAGAAGGGGTAGATATTACAGCTAATTCTCTTCATCCAGGAGCTGTTATCACCAATATATTTCGTCACACCAATATACTGTCTGGTTTAATTAATACAGTGGGTAGACTTGTCTTTAAAAATGTGCAGCAGGGAGCTGCAACAACATGCTATGTAGCATTGCATCCACAAGTGAAGGAAATCAGTGGCCATTATTTTCAAGATTGTAATGTTTCCACAGAAAACTCACAAGCAAGGAACCCTGAATTGGCTAAGAAATTATGGGATTTTAGCTTAAACCTCATCAAGTAG 939 0.3908 MWWLFGRTNGSGFSSSSTAEEVTQGIDGNNLTAIVTGATSGIGVETARVLAMRGVHVIMGVRNLVTAKDVKEGILKEIPSAKLDYMELDLSSMASVRKFASNFISSGLPLNILINNAGIFAAPFTLSEDNIELQFATNHIGHFLLTNLLLDTMKKTAHETKKQGRVVNVSSIVHLLPRGIRFDQINDPSSYHMWFTYGQSKLANVLHANELARRFKEEGVDITANSLHPGAVITNIFRHTNILSGLINTVGRLVFKNVQQGAATTCYVALHPQVKEISGHYFQDCNVSTENSQARNPELAKKLWDFSLNLIK* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1822 312 PRINTS Glucose/ribitol dehydrogenase family signature 32 49 IPR002347 -
Vra1g1822 312 PRINTS Glucose/ribitol dehydrogenase family signature 108 119 IPR002347 -
Vra1g1822 312 PRINTS Glucose/ribitol dehydrogenase family signature 158 174 IPR002347 -
Vra1g1822 312 PRINTS Glucose/ribitol dehydrogenase family signature 220 237 IPR002347 -
Vra1g1822 312 Gene3D - 26 312 - -
Vra1g1822 312 CDD retinol-DH_like_SDR_c_like 32 304 - -
Vra1g1822 312 PANTHER RETINOL DEHYDROGENASE 3 312 - -
Vra1g1822 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 289 IPR036291 -
Vra1g1822 312 Pfam short chain dehydrogenase 32 239 IPR002347 -
Vra1g1822 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 108 119 IPR002347 -
Vra1g1822 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 172 IPR002347 -
Vra1g1822 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Vra1g1822 312 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 3 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1822 Vra-Chr1 34765251 34770552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1822 34 282 Acyl Lipid Metabolism Gene Families AT3G55290 29.213 3.50e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1822 - - gmx:100794358 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1822 1 34765251 34770552 Vra1g1822 1 34765251 34770552 ECH
Vra1g1822 1 34765251 34770552 Vra8g2218 8 40476695 40481417 PCT