Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1496 ATGTCCCACACACCACCGCAAGCCCTCGATTCCGAGGAGCCAACCCCCGCATCCGCTGCCACTGCCGCCCAAACCCCCGAATCCCATGCCGCCACGCTCCTCCACCTTTCTTTCAACCAAGATTCCGGATGCTTCGCTGCGGCCACTGACCGCGGCTTCCGCATCTACAACTGCGACCCTTTCCGGGAGATTTTCCGCCGCGATTTCGGCCCCGGCGGCGGTGTTGGCCTCGTCCACATGCTCTTCCGCTGCAACATACTCGCCTTCGTCGGTGGCGGCGCCGACCCACGCTATCCCCCCAACAAAGTTATGATCTGGGACGACCACCAGTCCCGCTGCATCGGCGAGCTATCTTTCCGCTCCGAGGTGAAGGGCGTCCGGCTCCGGCGCGACCGCATCGTGGTGGTCTTGGCGCACAAGATCTTTGTGTACAACTTTTCCGATCTCAAGGTGCTGCACCAAATTGAGACCATCGCGAACCCTAAGGGCCTCTGCGACCTCTCCCACGTTTCGGCCACCATGGTCCTAGTCTGCCCCGGGTTGCAGAAGGGGCAGGTTAGGGTTGAGCACTACGCCTCCAAGAGAACCAAGTTCATCATGGCGCACGATTCCCGAATTGCTTGTTTTTCTCTCACACATGATGGCAGATTGCTCGCCACCGCTAGCTCCAAGGGCACCCTCATTAGGCTCTTCAATACCCTCGACGGTTCATTGCTCCAAGAGGTAAGGAGGGGTGCAGACCGAGCAGAGATATACAGCCTTGCATTCTCTCCTACTGCACAGTGGCTTGCTGTTTCAAGTGACAAGGGTACCGTTCATGTTTTCAACCTGAAGGTTGATTCTGGACTGATGGGGCATGACAGATCGAACAGTACTTCCGAGACTAATCCTGCTAACCCTACTGCTGTTTCATCTCTTTCATTTATTAAAGGTGTGCTACCTAAGTATTTTAGCTCGGAGTGGTCCGTGGCTCAATTTCGCTTGCAAGAAGGTTTGCAGTATATTGTGGCATTTGGCCATCAAAAGAATACAATTGTAATACTAGGCATGGATGGCAGCTTCTATCGATGTCAGTTTGACTCCTCGAGCGGTGGAGAGATGACCCAACTTGAATATTATAATTTCCTAAAGGCAGAAGACACATTCTAG 1149 0.5413 MSHTPPQALDSEEPTPASAATAAQTPESHAATLLHLSFNQDSGCFAAATDRGFRIYNCDPFREIFRRDFGPGGGVGLVHMLFRCNILAFVGGGADPRYPPNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFSDLKVLHQIETIANPKGLCDLSHVSATMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFSLTHDGRLLATASSKGTLIRLFNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLMGHDRSNSTSETNPANPTAVSSLSFIKGVLPKYFSSEWSVAQFRLQEGLQYIVAFGHQKNTIVILGMDGSFYRCQFDSSSGGEMTQLEYYNFLKAEDTF* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1496 382 MobiDBLite consensus disorder prediction 1 24 - -
Vra8g1496 382 Pfam WD domain, G-beta repeat 245 276 IPR001680 GO:0005515
Vra8g1496 382 PANTHER AUTOPHAGY-RELATED PROTEIN 18A-LIKE ISOFORM X1 16 382 - -
Vra8g1496 382 SUPERFAMILY WD40 repeat-like 28 278 IPR036322 GO:0005515
Vra8g1496 382 SMART WD40_4 19 57 IPR001680 GO:0005515
Vra8g1496 382 SMART WD40_4 235 276 IPR001680 GO:0005515
Vra8g1496 382 SMART WD40_4 192 232 IPR001680 GO:0005515
Vra8g1496 382 Gene3D - 10 356 IPR015943 GO:0005515
Vra8g1496 382 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 16 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1496 Vra-Chr8 31890138 31893057 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1496 K22991 - gmx:100787427 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0690 3 7354772 7358425 Vra8g1496 8 31890138 31893057 ECH
Vra8g1496 8 31890138 31893057 Vra8g1496 8 31890138 31893057 ECH
Vra3g0094 3 1003140 1006649 Vra8g1496 8 31890138 31893057 PCT