Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1144 ATGGAATCAACTCATGTAATATCCATTACAAATGGTGAAGACAATGTTGCTCCAAGGAAGAATACAACTAAAACGTTTAAATTTTCACTTCCACCAGTTCTTTCCCTTCTTAGAGAACACAAAATCCATCTCTTGGATAAGCAAATGAAAGACGCTAAAAACATTATCCACAGCATCAAAGTTGGAATCTCCCTTGTTTTGATTTCACTTCTGTACCTCTTGGATCCTCTTTACGAGCAAGTTGGAGAAAATGCTATATGGGCTATCATGACTGTGGTCGTCACCTTCGAATTTTCCGCAGGAGCTACTCTAGGCAAAGGTTTAAATCGCGGAATGGGAACTATATTAGGAGGTGGACTGGGTTGTATAGCAGCAGTTTTGGCTCAAAATATTGGTGGAGTTGGGAACTCTATTATAATTGGTGCTTCTGTATTTATCTTTGGGACAATTGCAACATATTTTCGACTATTCCCAAGCGTGAAGAAGAGATACGATTATGGAGTGATGATTCTTATTCTGACTTTTAGTTTGATTGTGGTGTCTGGTGTGCGCACTGAAGATCAGAAAGTTTGGGAAATAGCAGTTGAACGGCTTTTAACAATTGTGATGGGTTTCGTTGTGTGCATTTGTGTGAACTTGTTGATCTTCCCATTGTGGGCCAGTGATGAACTTCATGATTCCATTGTCTCTAGATTCCAACACATTGCTGATTCATTACAAGGGTGCATGGAGGAATATGTCAAATTCGTTAGTCAAAAAGAAAGTAAAAAGCCTGGTGCTAGCTTCAGTGTTTGCAAGTCTTTGTTGGACTCCAAATCAAAGGACGAGGTTCTGGAAAATTTTGCAAAATGGGAACCCTGGCATGGAAAATTTGGATTTTTCTATCCTTGGGAGAAGTACCTAAAGATTGGAGACGTTCTTCGAGAACTGGCTGCAATAATTCTTGCTTTGGGAGGTTGCCTCCAGGCCTCAGAAACGGCCATGAAAGTGGAACCGGTGAGTCAAAGTGTTGAAATGGAACCATGTGAGGCAATTGGGTCAGGAATTGTGTGGAGTCTACGAGAACTTGGGAAGAGCATGAAGCAAATGAGCAAGTGTGAGGCTGACATATCAGAAAAGTTGAAGACAATGAGAGGAGAGATAAACTTGGTAATTTCCACGTCGAAAATGGCAGCAATTGATAACATGGATGCACTTGCAGTGGCGAGCTTCGTCTTCTTATTGAAGAAAGTTGTGGAGAAAGTAGAAGAACTTACCAAAGAGGTGGAGCAACTGGGAGACCTAGCTGCTTTTCCTGCTCATTCAACTTTAGTCTAA 1317 0.4108 MESTHVISITNGEDNVAPRKNTTKTFKFSLPPVLSLLREHKIHLLDKQMKDAKNIIHSIKVGISLVLISLLYLLDPLYEQVGENAIWAIMTVVVTFEFSAGATLGKGLNRGMGTILGGGLGCIAAVLAQNIGGVGNSIIIGASVFIFGTIATYFRLFPSVKKRYDYGVMILILTFSLIVVSGVRTEDQKVWEIAVERLLTIVMGFVVCICVNLLIFPLWASDELHDSIVSRFQHIADSLQGCMEEYVKFVSQKESKKPGASFSVCKSLLDSKSKDEVLENFAKWEPWHGKFGFFYPWEKYLKIGDVLRELAAIILALGGCLQASETAMKVEPVSQSVEMEPCEAIGSGIVWSLRELGKSMKQMSKCEADISEKLKTMRGEINLVISTSKMAAIDNMDALAVASFVFLLKKVVEKVEELTKEVEQLGDLAAFPAHSTLV* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1144 438 Pfam Aluminium activated malate transporter 50 405 IPR020966 GO:0015743
Vra8g1144 438 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 4 432 - -
Vra8g1144 438 Coils Coil 408 428 - -
Vra8g1144 438 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 12-LIKE 4 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1144 Vra-Chr8 26450015 26453331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1144 50 387 Miscellaneous Gene Families AT4G17970 40.118 7.44e-87 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1144 - - gmx:100527892 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1144 8 26450015 26453331 Vra8g1144 8 26450015 26453331 ECH
Vra3g0097 3 1023508 1025802 Vra8g1144 8 26450015 26453331 PCT
Vra3g0605 3 6603164 6605447 Vra8g1144 8 26450015 26453331 PCT