Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0097 ATGGAATCAACTCACGTAATAGCCATTACAAATAGAGAAGAAGATAATTTCCCACATACAACCAAAGAGAACAAAACATTCCAATTTTCCTATCTTGGGAAAAATGAAGTCCACTGTGTTTCCATTGCTTTCAATGCCAGACACAAGCAGATGCAGAGAGACCAAGACACCAGGAAGATGATTCACTGCATCAAAGTAGGAATCTCCTTGGTTTTGGTTTCACTTCTGTACCTCTTGAACCCTGTCTTTAAGCAACTTGGAGAAAATGCAATGTGGGCTATCATGACAGTTGTGGTCATGTTTGAATTCTCTGCAGGGGCCACACTAGGAAAGGGCTTCAACCGTGGACTGGGAACTATTGTAGGAGGAGGACTAGGTTGCTTAGCAGCACTTTTTGCACAAAGCATTGGGATTGGCAGGGTTGGCAACTACATCATAATAGCTGCTTCTGTATTTATATTGGGATCATTTGCCACATATCTTCGACTGATTCCAAGCATAAAGAAAAGATACGATTATGGAGTGATGATATTCTTGCTGACTTTCAATCTAGTTGTGGTTTCTGTCACACGCGTGAATGTGAAAGTGTGGGAATTAGCCGGTGAACGTCTCTTGAATATACTGATGGGCCTCATTGTATGCGTCTGTGTGAACTTGCTCGTCTTTCCTTTGTGGGCAAGTGATGAACTTCACGATTCCATCGTCTCCAGATTCCTTGACCTTGCCAATACAATTCAAGGTTGTTTAGGCGAATGTACCAAAATGATTAACGAAAAGGAAAATCAACCCTGTGCTAGCTTCAACGTTTGCAAGTCAGTGTTGAACTCCAAGTCAAAGGATGAATCATTGGCAAATTTCGCAAACTGGGAACCCTGGCATGGAAAATTTGGATTTTCCTACCCTTGGGAAAGGTACTTAAAGATTGGGGAGATTCTTCGCGAACTGGCTGCATTTATTCTTGCAATGCGTCGTTGCCTCGAAGCATCAAAAGAGCCCATGGCCACATTGAGAGAATCACAATGGGTCTATTTAGAAACATGCGAAGCACTTGAGTCAAAGGTTGCGTGCGTTCTGCAAGAACTTGGAGACAGCATGAAGCAAATGATGAAATGTAATGCAAAGGGTTGTGTTTCGGAGCAGCTGAAAGCCGCCAGAGAAGATTTAAGCTTCATAATTTCCACGTTCAAAATGGCACAACTTGAGGATGATCAAGTGCTAGCCATTGCTAGCTTCGTCTTCTTGCACATGGAAGTGATACAGAAGGTTGAGGAACTGGTGAAAGAGGTGGAAGAACTTGGAGAAATCGCAGGTTTTCGCACCCCAATAACTGCATTGTCTTCGTAG 1344 0.4293 MESTHVIAITNREEDNFPHTTKENKTFQFSYLGKNEVHCVSIAFNARHKQMQRDQDTRKMIHCIKVGISLVLVSLLYLLNPVFKQLGENAMWAIMTVVVMFEFSAGATLGKGFNRGLGTIVGGGLGCLAALFAQSIGIGRVGNYIIIAASVFILGSFATYLRLIPSIKKRYDYGVMIFLLTFNLVVVSVTRVNVKVWELAGERLLNILMGLIVCVCVNLLVFPLWASDELHDSIVSRFLDLANTIQGCLGECTKMINEKENQPCASFNVCKSVLNSKSKDESLANFANWEPWHGKFGFSYPWERYLKIGEILRELAAFILAMRRCLEASKEPMATLRESQWVYLETCEALESKVACVLQELGDSMKQMMKCNAKGCVSEQLKAAREDLSFIISTFKMAQLEDDQVLAIASFVFLHMEVIQKVEELVKEVEELGEIAGFRTPITALSS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0097 447 Pfam Aluminium activated malate transporter 55 432 IPR020966 GO:0015743
Vra3g0097 447 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 4 439 - -
Vra3g0097 447 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 12-LIKE 4 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0097 Vra-Chr3 1023508 1025802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0097 55 394 Miscellaneous Gene Families AT5G46600 41.261 4.55e-87 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0097 - - gmx:100802201 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0097 3 1023508 1025802 Vra3g0097 3 1023508 1025802 ECH
Vra3g0097 3 1023508 1025802 Vra8g1144 8 26450015 26453331 PCT