Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0605 ATGGATATTGAGTCAACAATGGAAGCAAACAAAGAAGAGTTTTTTGTCTATTGGAAGAACTGCCTCAAGGCTTTGTCTAGGAACATCAAGTTTATGGTTATCAACTTCATAAAGAGCATAACAAAGATTGGAAAAGATGATCCCAGACGAGTATTTCACTCGTTAAAAGTTGCATTCGCTCTTACCTTGGTTTCCTTGTTTTACTACTCGAGGCCTCTTTACGATGGTTTCGGAGACGCTGGAATGTGGGCTGTTCTGACAGTAGTGGTTGTATTTGAATTCAGTGTAGGTGCAACTCTCTACAAAAGTTTAAATAGAGGATGTGCTACATTATTAGCTGGTGCTTTAGGAGTTGGAGGGCAACACTTAGCTTCTGCTTGTGGAGAAAGAGAAAAACCTATTGTCCTTGGGATCCTAGTCTTCATTCTAGCCGCGGGAGCTACTTTTTTCAGATTTTTTCCAAAGATCAAGGCAAGATATGATTATGGATTGGTGATATTTATTTTGACCTTCTGTTTAGTTGCTGTCTCGGGATATCGAGTGGAAGAACTCTTTGAACTTGCTCATCAGAGACTTTCAACAATTTTAATAGGGGTAACAGCTTGCATGGTCATCTCCATTTTCATTTGTCCAGTATGGGCAGGTGAAGACCTTCACAAGTTGGTAGCTTCCAACATAGAAAAGTTGTCAAATTACCTACAAGGATTTGAAGTGGAATATTTTCATTGCTCAGAGGATAAAGAAAAATGTGAGAAGTCAATTCTTGAAGGATACAAAACTGTTCTCAATTCCAAAGCAAGTGAGGAGTCCTTGGCAAATTTGGCAAGGTGGGAACCGGGACATGGTGGTTTTCGTCTTCGACATCCTTGGACACAGTACTTGAAGATTGGAGTACTTACTCGGGAATGCGCTTACAAGATTGAAACCCTTAACAACTACCTTAACCCGAAAATCCCTACATCTTTGGAATTCAAATGTAAAATTCAAGAACCATGCACAAAGATGATTTCAGAATCAAACAAAGCGTTAAACGTTATATTTTCATCAATCAAAACAATGACACATCCATCAGCTGCAAAAAGCCACATCGAGAATGCAAAAACTGCAGTTGAAGAGCTCAAATTTACCCTTGAAACTGTTTCTTTGGAAGGAGCTGAACTCCTATCCATAATTCCAGTTGTCACAGTAGTTTCAATACTCAAAGAAATCACCAAGTCAGTGGAAAAAATATACGAGTCTGTTTCCGAACTTTCTCACTTAGCCTACTTCAAGAGTGTTGCAGAACCCAATGTGTCACCAGAGAAGTCACACCTTCTTCATCGAGGTATCATAAAACCTGTTGTGGATATTGAAAACACAATCGACCACGTTACAATCACGATCCCAGAAATAACTACAGATTCACCAGAAAAAGAAAAGACAGCAACAAAACCCTGCGAACGTATGTAA 1449 0.3927 MDIESTMEANKEEFFVYWKNCLKALSRNIKFMVINFIKSITKIGKDDPRRVFHSLKVAFALTLVSLFYYSRPLYDGFGDAGMWAVLTVVVVFEFSVGATLYKSLNRGCATLLAGALGVGGQHLASACGEREKPIVLGILVFILAAGATFFRFFPKIKARYDYGLVIFILTFCLVAVSGYRVEELFELAHQRLSTILIGVTACMVISIFICPVWAGEDLHKLVASNIEKLSNYLQGFEVEYFHCSEDKEKCEKSILEGYKTVLNSKASEESLANLARWEPGHGGFRLRHPWTQYLKIGVLTRECAYKIETLNNYLNPKIPTSLEFKCKIQEPCTKMISESNKALNVIFSSIKTMTHPSAAKSHIENAKTAVEELKFTLETVSLEGAELLSIIPVVTVVSILKEITKSVEKIYESVSELSHLAYFKSVAEPNVSPEKSHLLHRGIIKPVVDIENTIDHVTITIPEITTDSPEKEKTATKPCERM* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0605 482 Pfam Aluminium activated malate transporter 42 418 IPR020966 GO:0015743
Vra3g0605 482 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 1 438 - -
Vra3g0605 482 Coils Coil 363 383 - -
Vra3g0605 482 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 8 1 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0605 Vra-Chr3 6603164 6605447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0605 1 463 Miscellaneous Gene Families AT3G11680 55.063 3.63e-164 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0605 - - gmx:100170704 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0605 3 6603164 6605447 Vra3g0605 3 6603164 6605447 ECH
Vra3g0605 3 6603164 6605447 Vra8g1144 8 26450015 26453331 PCT