Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0044 ATGGAGCAGGGTGGCAGAGAAGACCAGACCACCACCTTCAACAAATATGCCTTTGCTTGTGCTATAGTTGCTTCAATGGTTTCCATCATCTCTGGTTACGATACTGGTGTGATGAGTGGAGCAATAATATTCATCAAGGACGATATTGGAATCAGCGATACCCAGCAAGAGGTTCTTGCAGGAATCTTGAACCTATGCGCGTTGGTAGGATCATTAGCTGCAGGAAGAACCTCTGATTACATCGGTCGTCGATACACAATTTTGTTAGCCTCCGTTCTGTTCATGCTGGGTGCAATTCTGATGGGATACGGCCCCAACTATGCAATATTAATGGTTGGAAGGTGCGTTGGAGGTGTGGGTGTGGGTTTTGCTCTTATGATAGCACCGGTTTACTCGGCAGAGATTTCCTCTGCATCATCCAGGGGTTTTCTAACGTCTTTGCCGGAGCTTTGTATCGGCATTGGCATCTTACTTGGCTACGTATCGAACTTCTTCTTGGGAAAATTGACCTTGAAGCTTGGATGGAGGTTGATGCTTGGTGTTGCTGCGCTTCCTTCACTTGCTTTGGCTTTGGTTATTATGGCAATGCCAGAATCGCCAAGGTGGTTAGTGATGCAGGGTCGTTTGGAAGGTGCGAGGAAGGTGCTGTTGAAAGTTTCAAACAGCACAAAAGAGGCCGAACTTCGTTTGAGCGAAATAAAAGTGGCTGTAGGGTTTGATGAGACGTGTGGCAAGGTCCCTGAGAAGTCACAGGGTGAAGGGGTTTGGAAAGAGTTGCTTGTGAGGCCCACACCGGAAGTTCGATGGATGGTGATTGCAGCAGTAGGGATTCATTTTTTCGAGCATGCAACTGGCATTGAAGCTGTGATGTTGTATAGTCCCAGAATCTTCAAGAAAGCTGGTGTGAGAAGTAAGGATAAGCTGTTGCTTGCGACTGTTGGAATTGGTCTGACTAAGATAATTTTCTTGTTGATGGCTTTGTTTTTGCTTGACAAAGTTGGTAGAAGGCGCCTCTTGCAAATAAGCACTGGGGGGATGATTTGTGGGCTCACACTTTTGGGTTTTAGTTTGACCATGGTTGATCAATCCAGTGAAAAGGTATTGTGGGCTTTGAGTCTTAGCATTGTGGCCACATATGCTTATGTTGCTTTCTTTAACATTGGGCTTGGGCCTGTGACTTGGGTGTACAGCACGGAGATATTCCCTTTGAAGTTGAGGGCGCAAGGGGCTAGTATAGGAGTTGCAGTGAATAGAACCATGAATGCTGTGGTTTCCATGAGCTTTATTTCAATCTCCAAAGCATTCACCATTGGTGGCAGCTTCTTCATGTTTGCTGGTGTATCTGTACTCGCTTGGTTGTTCTTTTACTTTTTTCTTCCTGAAACCAAAGGCGTTCCTTTGGAAGACATGCAATTGGTTTTTAGCAAAAAATCCTGCGCTAAAAACCTAGTTACAAAAACTTAA 1464 0.4522 MEQGGREDQTTTFNKYAFACAIVASMVSIISGYDTGVMSGAIIFIKDDIGISDTQQEVLAGILNLCALVGSLAAGRTSDYIGRRYTILLASVLFMLGAILMGYGPNYAILMVGRCVGGVGVGFALMIAPVYSAEISSASSRGFLTSLPELCIGIGILLGYVSNFFLGKLTLKLGWRLMLGVAALPSLALALVIMAMPESPRWLVMQGRLEGARKVLLKVSNSTKEAELRLSEIKVAVGFDETCGKVPEKSQGEGVWKELLVRPTPEVRWMVIAAVGIHFFEHATGIEAVMLYSPRIFKKAGVRSKDKLLLATVGIGLTKIIFLLMALFLLDKVGRRRLLQISTGGMICGLTLLGFSLTMVDQSSEKVLWALSLSIVATYAYVAFFNIGLGPVTWVYSTEIFPLKLRAQGASIGVAVNRTMNAVVSMSFISISKAFTIGGSFFMFAGVSVLAWLFFYFFLPETKGVPLEDMQLVFSKKSCAKNLVTKT* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0044 487 PRINTS Sugar transporter signature 28 38 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra7g0044 487 PRINTS Sugar transporter signature 111 130 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra7g0044 487 PRINTS Sugar transporter signature 281 291 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra7g0044 487 PRINTS Sugar transporter signature 375 396 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra7g0044 487 PRINTS Sugar transporter signature 398 410 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra7g0044 487 ProSiteProfiles Major facilitator superfamily (MFS) profile. 20 463 IPR020846 GO:0022857
Vra7g0044 487 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 9 482 IPR045262 GO:0015144
Vra7g0044 487 SUPERFAMILY MFS general substrate transporter 8 471 IPR036259 -
Vra7g0044 487 TIGRFAM SP: MFS transporter, sugar porter (SP) family 14 469 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra7g0044 487 Pfam Sugar (and other) transporter 20 474 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra7g0044 487 PANTHER POLYOL TRANSPORTER 3-RELATED 9 482 - -
Vra7g0044 487 ProSitePatterns Sugar transport proteins signature 1. 326 343 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra7g0044 487 ProSitePatterns Sugar transport proteins signature 1. 74 91 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra7g0044 487 ProSitePatterns Sugar transport proteins signature 2. 116 141 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra7g0044 487 Gene3D MFS general substrate transporter like domains 9 478 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0044 Vra-Chr7 1096406 1098145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0044 8 474 Organic Solute Cotransporters AT2G18480 71.186 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0044 - - var:108328789 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0671 11 5380177 5381739 Vra7g0044 7 1096406 1098145 PCT
Vra7g0044 7 1096406 1098145 Vra11g0672 11 5386392 5388270 PCT