Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0672 ATGGAGATACGTGGTGAAAAAGAGCAGTTTAACAAATATGCTTTTGCATGTGTTTTAGTCGCTTCCATGATATCCATTATATTTGGATATGATACCGGTGTTATGAGTGGAGCCATGATATTCATAAAGGAGGAGTTTGGAACCAGCGACACCCGACAAGAAATTCTTGCAGGCATCTTAAACCTTTGTGCATTGGTAGGTTCTTTAGCTGCAGGAAGAGCCTGTGATTACTTCGGTCGACGCTACACAATCTCTGTAGCCTCTTTCCTTTTCATGACGGGTTCAATTCTCATGGGATATGGTCCAAACTACGCAATTCTTATGCTGGGAAGGTGTGTTGCGGGAATTGGCGTGGGTTTTGCCCTTATGATAGCGCCGGTTTATTCTGCAGAAATCTCCTCGGCTAAATCCCGAGGCTTTCTAGCTTCCCTCCCTGAGCTTGGTATTGGTATTGGAATTTTACTTGGCTACGTTGCAAACTATTTCTTAGGTAAGTTGAGTTTGAAGGTTGGGTGGAGATTGATGCTTGGTATTGCAGCAGTTCCTTCACTTGTTCTGGCTTTAGGCATTCTCTTAATGCCCGAGTCTCCAAGGTGGTTGGTGGTGCAAGGCCATTTGGGAAAAGCCAAGAAAGTTTTGTTGAAAGTTTCAAATACCGAACAAGAAGCTGAGCTTCGGTTCAAGGATATTAAGATTGCTGCTGGGATAATTGACGAGAATTGCTCTGAAGAAACAGTTAAGCTAGCAGAAAAGAACAATGGTGAAGGGGTTTGGAAAGAGTTGCTTCTGAGACCATCTTCTTCTGTTCGGTGGATGCTGATTGCAGCTGTGGGGGTTCACTTTTTTCAGCATGCTACTGGAATTGAAGCTGTGATGCTCTACAGTCCAAGAATCTTTAAGAAAGCAGGTGTTACCACTAAGGACAAGCTCCTGCTCACAACGATTGGAGTAGGCGTTACAAAAATCATTTTTTTGACCATAGCCACATTTTTTCTTGACAGAGTTGGGAGAAGACGCCTCTTGCTTTCAAGTACTGGAGGAATGGTTTGTAGTCTTGCAGTATTAGGATTCAGCCTGACCATGGTTCAGAGTTCCGAGGAAAAGGTCTTATGGGCCTTGACCCTCAGCATAGTGGCTACTTACTCATTTGTTGCTTCCTTTAATATGGGACTTGGACCTGTGACATGGGTGTACAGCTCAGAGATTTTTCCTCTCAAGTTGAGAGCACAAGGAGTGAGTATTGGAGTTGCAGTTAACAGAGTTATGAATGCTGCAATTGCCATGAGTTTTATTTCAATCTACAAAACACTCACCATAGGAGGTGCCTTTTTCATGTTTGCTGCTATATCTATATTGGCTTTGTTCTTCTTCTACTTTTTCCTGCCTGAAACCAAGGGCAAGGCCTTGGAAGAGATGGAGATGGTCTTCAGCAAACACTACAGTAGAAATGTACCTGCTGAAACTGATCTGAGGCAGAACGTGTAA 1485 0.4337 MEIRGEKEQFNKYAFACVLVASMISIIFGYDTGVMSGAMIFIKEEFGTSDTRQEILAGILNLCALVGSLAAGRACDYFGRRYTISVASFLFMTGSILMGYGPNYAILMLGRCVAGIGVGFALMIAPVYSAEISSAKSRGFLASLPELGIGIGILLGYVANYFLGKLSLKVGWRLMLGIAAVPSLVLALGILLMPESPRWLVVQGHLGKAKKVLLKVSNTEQEAELRFKDIKIAAGIIDENCSEETVKLAEKNNGEGVWKELLLRPSSSVRWMLIAAVGVHFFQHATGIEAVMLYSPRIFKKAGVTTKDKLLLTTIGVGVTKIIFLTIATFFLDRVGRRRLLLSSTGGMVCSLAVLGFSLTMVQSSEEKVLWALTLSIVATYSFVASFNMGLGPVTWVYSSEIFPLKLRAQGVSIGVAVNRVMNAAIAMSFISIYKTLTIGGAFFMFAAISILALFFFYFFLPETKGKALEEMEMVFSKHYSRNVPAETDLRQNV* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0672 494 Pfam Sugar (and other) transporter 18 476 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra11g0672 494 TIGRFAM SP: MFS transporter, sugar porter (SP) family 11 472 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0672 494 ProSiteProfiles Major facilitator superfamily (MFS) profile. 17 465 IPR020846 GO:0022857
Vra11g0672 494 PANTHER POLYOL TRANSPORTER 3-RELATED 6 482 - -
Vra11g0672 494 ProSitePatterns Sugar transport proteins signature 2. 113 138 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra11g0672 494 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 6 482 IPR045262 GO:0015144
Vra11g0672 494 Gene3D MFS general substrate transporter like domains 6 480 IPR036259 -
Vra11g0672 494 PRINTS Sugar transporter signature 25 35 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0672 494 PRINTS Sugar transporter signature 108 127 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0672 494 PRINTS Sugar transporter signature 283 293 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0672 494 PRINTS Sugar transporter signature 377 398 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0672 494 PRINTS Sugar transporter signature 400 412 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0672 494 SUPERFAMILY MFS general substrate transporter 7 473 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0672 Vra-Chr11 5386392 5388270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0672 2 482 Organic Solute Cotransporters AT4G36670 65.424 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0672 - - gmx:102661233 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0044 7 1096406 1098145 Vra11g0672 11 5386392 5388270 PCT