Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0671 ATGGAAAACAAGGACACTCATAGAAAGCTTAACAACTATGCTTGTGCCTCTGTGTTAGCTGCCTCTACTGTCTCTGCTATATTTGGTTATGTGTCAGGAGTGATGAGCGGAGCACTTATATTCATTCAAGAAGATCTTGAAATCAGTGACTTAGAAATACAAGTCCTAGCAGGCATGTTACATTTATGTGCACTACCAAGTAGTTTGGTTGCAGGAAGAACATCTGATTACATAGGTCGCCGCTATACCATCATTCTCGCCTCCTTCGCCTTCTTACTGGGCACTGTTCTGATGGGCTATGGCGCATCTTATCTAATCTTAATGATTGGTAATTGCATTCTTGGAATTGGTGTGGGTTTTGCACTGGTAGTAGCATCAGTTTACAGTGCAGAGATTTCACCTCCTTCTTCCAGAGGCTTTTTTACCTCTCTCCCACAAGTTTCCCTCAACATAGGACTCTTGCTAGGCTACATGGCAAACTATTTCTTCGAAAAATTGTCACTGAAACTTGGATGGAGAATGATGGTGGCCGTTCCTTCAATCCCTTCACTTGTTCTTATCATTCTCATGTTAAAACTGGTAGAGTCTCCTAGGTGGTTGGTCATGCAAGGACGCGTAGGTGAGGCCAGGAAAGTGCTTCTGCTGGTTTCTAATACAAAGGAGGAAGCTGAAAACAGGCTGAGAGAAATAAAAGGTGTTGTTGGAATTGATGAAAACTGCACCCAAGACATCGTGGAGGTTCCAAAGAGAACTCGCAGCGGTGAAGGAGCTCTGAAAGAATTGTTTTGTAATGCTTCACCTTCTGTTCGTAGGATGTTGATTGCAGCCATTGGACTTCATTTGTTCCTACGGATTGGTGGAAGTGGGGGTATTTATTTATACAGTCCAAGGGTTTTTCAGAGAACAGGAATCACTAACAAGAGCAAGCTCATGCTAGCCACTGTCGGCATGGGAGTGAGCAAAGTTGTATCTTCGTTGATATCGATGTTTTTGTCGGATAAATTTGGGAGGAGGATTCTTTTACTGATTAGTGCAACAGGTGTTGTTGTCAGCCTATTAGGGTTGGGTTTTTGCTTGAGCATAGTAGAACATTCGAAGGAAAAAGTAGTGTGGGCATCGAGTTTTACCATTATTCTTACCTACTTGTTTGTGGGTTTTATGTCTATTGGGATAGGACCAGTTACATGGGTTTATAGCTCTGAGATATTACCCCTTAGGTTCAGAGCTCAAGGTCTTGGTTTATGTGTGGTTCTGAACAGAATTACTACTGTGATAGTGGTTACAAGCTTCATTTCAATTTACAAAGCAATTACAATGGGTGGGATTTTCTTTCTGTTTGCTGCTATCAATGCTTTTGCTTTGTGTTTCTACTATACCTTGCCAGAAACTAAAGGAAGATTATTAGAAGATATGGAGATTGTCTTTGAGAAAAACTCTAAGTTGGAGATACAAATGAAGCCCCACAGCAGCAACCTTCAGTAG 1482 0.4163 MENKDTHRKLNNYACASVLAASTVSAIFGYVSGVMSGALIFIQEDLEISDLEIQVLAGMLHLCALPSSLVAGRTSDYIGRRYTIILASFAFLLGTVLMGYGASYLILMIGNCILGIGVGFALVVASVYSAEISPPSSRGFFTSLPQVSLNIGLLLGYMANYFFEKLSLKLGWRMMVAVPSIPSLVLIILMLKLVESPRWLVMQGRVGEARKVLLLVSNTKEEAENRLREIKGVVGIDENCTQDIVEVPKRTRSGEGALKELFCNASPSVRRMLIAAIGLHLFLRIGGSGGIYLYSPRVFQRTGITNKSKLMLATVGMGVSKVVSSLISMFLSDKFGRRILLLISATGVVVSLLGLGFCLSIVEHSKEKVVWASSFTIILTYLFVGFMSIGIGPVTWVYSSEILPLRFRAQGLGLCVVLNRITTVIVVTSFISIYKAITMGGIFFLFAAINAFALCFYYTLPETKGRLLEDMEIVFEKNSKLEIQMKPHSSNLQ* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0671 493 PRINTS Sugar transporter signature 25 35 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0671 493 PRINTS Sugar transporter signature 108 127 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0671 493 PRINTS Sugar transporter signature 377 398 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0671 493 PRINTS Sugar transporter signature 400 412 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0671 493 Pfam Sugar (and other) transporter 19 475 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra11g0671 493 ProSitePatterns Sugar transport proteins signature 1. 71 88 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra11g0671 493 ProSitePatterns Sugar transport proteins signature 2. 113 138 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra11g0671 493 Gene3D MFS general substrate transporter like domains 2 481 IPR036259 -
Vra11g0671 493 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 8 480 IPR045262 GO:0015144
Vra11g0671 493 ProSitePatterns Sugar transport proteins signature 1. 328 345 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra11g0671 493 SUPERFAMILY MFS general substrate transporter 8 472 IPR036259 -
Vra11g0671 493 PANTHER POLYOL/MONOSACCHARIDE TRANSPORTER 1 8 480 - -
Vra11g0671 493 ProSiteProfiles Major facilitator superfamily (MFS) profile. 17 465 IPR020846 GO:0022857
Vra11g0671 493 TIGRFAM SP: MFS transporter, sugar porter (SP) family 8 470 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0671 Vra-Chr11 5380177 5381739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0671 10 480 Organic Solute Cotransporters AT4G36670 50.424 3.27e-174 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0671 - - gmx:102662503 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0671 11 5380177 5381739 Vra11g0671 11 5380177 5381739 ECH
Vra11g0671 11 5380177 5381739 Vra7g0044 7 1096406 1098145 PCT