Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1538 ATGGCCACTACTCTCTCTGAAGCCTATAGAGACTACCCTCTCAACCTCCATCATATTATCCCCTTAGACTTTTCTTCACTAAGGACCTTGCCTGAAACCCATGCATGGCCTCAATCTGAAGATGCTCATCATCATCATCATGATGGGAGTGGATCATGCATACCCATCATTGACCTCATGGATCCTAATGCCATGGAACTCATAGGCCTTGCTTGTGAGAACTGGGGTGCCTTCCAATTGAAGAACCATGGCATACCCTTAAGTCTTGTGGAAGAGGTTGAAGAAGAAGCTAAGAGGCTCTTTGCCCTCCCCGCCGACAGGAAATTGAAAGCCCTACGATCCGCCGCCGGGGCCACCGGCTACGGCCGGGCACGGATATCATCATTCTTCCCCAAGCACATGTGGCATGAAGGATTCACCATCATGGGCTCTCCATGCGATGATGCCAAAAAGATTTGGCCTAATGACCATACACGGTTTTGCAACATAATAGAGAATTATCAGAAGCAAATGAAGTTGCTAGCAGAGAAGCTAACCCAGATGATACTGACAGTGTTGAAGATTTGTGAAGATGAAAAGGGGTGGATTGGTTCAAGTGAGTTGTGTGAAGCTGTTCAGCTGAACTTCTACCCTTGTTGCCCTGAGCCAAACCGAGCCATGGGTCTAGCTCCTCACACAGACACATCCTTCTTGACAATCCTCCACCAGAGCCAAACGAATGGCCTGCAAATCTTCAAGGAGGGTGCAGGGTGGGTCTCCGTGGACCCTCAGCCGAACACCCTTGTTGTTCACACGGGTGACATTCTTCACATCTTGTCGAACTCAAGGTTCCGTTGTGCATTGCATCGTGTGATGGTGAACAGTGCAAGGCAAAGATACTCTGTGGCCTATTTCTATGGCCCCCCTTTGGATTATGTACTATCTCCATTGCTTCTTCTCACTCCTTTCCCTCGTTTTCGTTCTTTGTCTATCAAGGACTACATTGGCATCAAGGCCAAAAACCTTGGTGAAGCATTGTCTTTGATTACTACAACTCAAAACTAA 1044 0.478 MATTLSEAYRDYPLNLHHIIPLDFSSLRTLPETHAWPQSEDAHHHHHDGSGSCIPIIDLMDPNAMELIGLACENWGAFQLKNHGIPLSLVEEVEEEAKRLFALPADRKLKALRSAAGATGYGRARISSFFPKHMWHEGFTIMGSPCDDAKKIWPNDHTRFCNIIENYQKQMKLLAEKLTQMILTVLKICEDEKGWIGSSELCEAVQLNFYPCCPEPNRAMGLAPHTDTSFLTILHQSQTNGLQIFKEGAGWVSVDPQPNTLVVHTGDILHILSNSRFRCALHRVMVNSARQRYSVAYFYGPPLDYVLSPLLLLTPFPRFRSLSIKDYIGIKAKNLGEALSLITTTQN* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1538 347 SUPERFAMILY Clavaminate synthase-like 17 334 - -
Vra6g1538 347 Coils Coil 164 184 - -
Vra6g1538 347 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 201 301 IPR005123 -
Vra6g1538 347 Pfam non-haem dioxygenase in morphine synthesis N-terminal 54 154 IPR026992 -
Vra6g1538 347 Gene3D - 17 329 IPR027443 -
Vra6g1538 347 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 12 338 - -
Vra6g1538 347 Pfam 2OG-Fe(II) oxygenase superfamily 204 301 IPR044861 -
Vra6g1538 347 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1538 Vra-Chr6 30420431 30422541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1538 54 327 Glycosyltransferase AT5G59530 30.743 8.68e-33 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1538 K04124 - gmx:100780857 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1538 6 30420431 30422541 Vra5g1151 5 17981812 17983154 PCT
Vra5g1152 5 17989459 17990655 Vra6g1538 6 30420431 30422541 PCT