Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1152 ATGAAAATGAGTACTCTGAATGAAGCATACCTAGAACACCCTCTCACCCTTGGTGATATCATCCCCATAGACTTTTCCTCTTCCCTGAGTTTACCCGATTCCCACACATGGTCTCAACCCATTGATGATGATGTTTTCTCATTGAAGAGTCCTGTATCATCACCCATGCCCATCATAGACATGATGGATCCCAATGCGAAGAAACTCATAGCCCTTGCATGTGAGAACTGGGGTGGCTTCCATTTGAAGAATCATGGCATACCCTTGGCTGTCATTCAAGGTGCTGAAGATGAACTCCAACGCCTCTTCTCTCTCCCAATTCAACAAAAGATGAAAGCTCTCAGATCCCCCGCTGGAGCCACTGGATATGGCATCCCAAGGATTTCACCTTTCTTCCCCAAGTTCATGTGGCACGAAGGATTCACCATCATCGGTTCTCCCTCTCACGATGCAAAAAAGTTATGGCCCAATGATTACCAACAATTTTCTGACAAAATGGAGAAGTATCAGAAGGAAATGAATACTTTAGCGGAGGTTCTGACAGAAACGGTGTTGGATGTGTTGGAGATTCCTGAGGAAAAAAGGAAGTGGATGGGTACAAGCGACGTTAGCACCATTCTGCAGTTGAATTTCTACCCAAGTTGTCCCGAACCGAACCGAGCCATGGGTTTGGCTCCTCACACTGACAGTTCTATCTTCACAATTGTTAATGTTAAAGAAAGTGGTCTTCAACTCATGAAGGAAGGAAAGTGGATCCCTGTGCAGCCTCCGCCGGACACTCTCCTTGTTCACGCCGGCGATTTTCTGCACATGATGTCCAATGGACGCTTCTGCAGCCCACTTCATCGCGTTGTGTCGACTGTGAGCAAGAAACGTTTCTCCATTGCTTATTTCTACTCTCCACCCACAGATTATGTGGTGTCTCCGTCGCTAACCGGAGATCTTGATGTTGCTCGCTTTCGTGATGTGACTGTGATGGAGTATATTGGGATCAAGGCTGACAATTTTGGAAAATCCCTCTCTGTCATTAGCACTTGA 1038 0.4634 MKMSTLNEAYLEHPLTLGDIIPIDFSSSLSLPDSHTWSQPIDDDVFSLKSPVSSPMPIIDMMDPNAKKLIALACENWGGFHLKNHGIPLAVIQGAEDELQRLFSLPIQQKMKALRSPAGATGYGIPRISPFFPKFMWHEGFTIIGSPSHDAKKLWPNDYQQFSDKMEKYQKEMNTLAEVLTETVLDVLEIPEEKRKWMGTSDVSTILQLNFYPSCPEPNRAMGLAPHTDSSIFTIVNVKESGLQLMKEGKWIPVQPPPDTLLVHAGDFLHMMSNGRFCSPLHRVVSTVSKKRFSIAYFYSPPTDYVVSPSLTGDLDVARFRDVTVMEYIGIKADNFGKSLSVIST* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1152 345 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 13 338 - -
Vra5g1152 345 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 202 301 IPR005123 -
Vra5g1152 345 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 13 338 - -
Vra5g1152 345 SUPERFAMILY Clavaminate synthase-like 25 335 - -
Vra5g1152 345 Pfam 2OG-Fe(II) oxygenase superfamily 207 301 IPR044861 -
Vra5g1152 345 Coils Coil 159 179 - -
Vra5g1152 345 Pfam non-haem dioxygenase in morphine synthesis N-terminal 57 156 IPR026992 -
Vra5g1152 345 Gene3D - 27 335 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1152 Vra-Chr5 17989459 17990655 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1152 70 328 Glycosyltransferase AT5G59530 28.102 3.70e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1152 K04124 - gmx:100818754 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1152 5 17989459 17990655 Vra6g1538 6 30420431 30422541 PCT