Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0591 ATGTCGAAGCAGACATACAGCGTGTGCTTCTGCTGGCGCCGGCGGTTTAAGCTCGCCCTGGCGGAGGCGCCGTCGGAAATCAAGACCCTCTTCGAGGAGTATTCTGAGAATGAGATCATGACACCTTCGCATCTGAAAAGGTTCCTTGTTGAAGTGCAAAAGCAAGAGAAGGCCACTGAAGAAGAGGCGCAAGCCATCATCGACAGCTTCAGGCATTTCCATCGCAGAGGGGTTGGCCTCAATCTCGAATCTTTCTTCAAGTACCTCTTCAGTGATGACAACCCCCCTCTTCTTCCTTCTCATGGGGTGTACCATGATATGACTTTTCCCTTGTCACATTATTTCATATATACTGGCCATAATTCCTATTTAACTGGGAATCAGCTGAGCAGCGAGTGCAGTGACGTGCCCATCATAAATGCACTGAAGAGAGGTGTGAGGGTGATTGAATTGGACATATGGCCTAATGCAGCAAAGGATAATATAAATGTTCTTCACGGAAATACTTTGACTCCTCCTGTAGAGCTCATCAGATGTTTGAGATCTATTAAGGAATATGCCTTTGTGGCATCAGAATATCCAGTTGTAATAACCCTAGAAGACCACCTCACACCGGATCTTCAGGCTAAAGTGGCTGAGATGGTTGCAAACACTTTTGGAGATATACTATTTACTCCTAACACCGAAAGCGTGAAGGAGTTCCCTTCTCCTGATTCTCTTAAAAGGAGGATTATTATATCAACAAAACCACCTAAGGAGTATCTTGGGGGAAAAGAAAAGGATAAAGGGGATGATTCACAGCATGAAAAGGGAAAGGAGGATGGAAAGGCTTCAGGCGAGGATGAAGCTTGGGGAAAGGAAGTCCCTAGCTTGAGAGGTGGTACTATAGAGGATTACAAGGACAACAACGTGGATGAAGAAGATCTTAATGATGACGACGAATCTGATGAATCAGATAAGTTACCACATAATGTAGCTCCAGAATATAGACGCCTAATTGCCATTCATGCTGGGAAGCCTAAAGGTGGATTAGAGGAATGCCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAGCAACAGCTTGAAAAGGCTGCTATAAATCATGGAAAGCAAATTGTAAGGTTTACTCAGCGCAATATTTTGAGGGTGTATCCCAAAGGTACTCGCATTGACTCATCAAATTATAACCCATTAATTGGGTGGATGCATGGAGCTCAGATGGTTGCATTTAACATGCAGGGATATGGTAGATCGCTTTGGTTGATGCATGGAATGTTCAGAGCCAATGGAGGGTGTGGTTATGTTAAGAAACCAGATTTTCTGTTAGAGACTGGTGGTTCAGACAATGAGGTCTTCGATCCTAAAGCCAAATTACCTGTGAAGACTACTTTGAAGGTGACTGTATATATGGGGGAAGGATGGTATTATGATTTCAAACATACACACTTTGATCAATACTCCCCTCCTGACTTCTATACAAGAGTGGGGATTGCTGGAGTCCCTAGTGATACTGTAATGAAGAAAACTAAGCCAATAGAGGATAATTGGTTACCTACATGGAATGAGACATTTGAGTTCCCTCTTTCTGTTCCAGAGTTGGCCTTGCTTCGCATAGAAGTTCATGAGTATGACATGTCTGAGAAAGATGACTTTGGTGGACAAACATGCCTACCTATCCGGGAGCTAAGAAGTGGCATTCGAGCAATTCCACTGAATAGCCAAAAGGGAGAGAAATACCCCTCTGTAAAGCTTCTCATGCGCTTTGAGTTTATTAATTGA 1791 0.4344 MSKQTYSVCFCWRRRFKLALAEAPSEIKTLFEEYSENEIMTPSHLKRFLVEVQKQEKATEEEAQAIIDSFRHFHRRGVGLNLESFFKYLFSDDNPPLLPSHGVYHDMTFPLSHYFIYTGHNSYLTGNQLSSECSDVPIINALKRGVRVIELDIWPNAAKDNINVLHGNTLTPPVELIRCLRSIKEYAFVASEYPVVITLEDHLTPDLQAKVAEMVANTFGDILFTPNTESVKEFPSPDSLKRRIIISTKPPKEYLGGKEKDKGDDSQHEKGKEDGKASGEDEAWGKEVPSLRGGTIEDYKDNNVDEEDLNDDDESDESDKLPHNVAPEYRRLIAIHAGKPKGGLEECLKVDPDKVRRLSLSEQQLEKAAINHGKQIVRFTQRNILRVYPKGTRIDSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMHGMFRANGGCGYVKKPDFLLETGGSDNEVFDPKAKLPVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYTRVGIAGVPSDTVMKKTKPIEDNWLPTWNETFEFPLSVPELALLRIEVHEYDMSEKDDFGGQTCLPIRELRSGIRAIPLNSQKGEKYPSVKLLMRFEFIN* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0591 596 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 358 444 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra6g0591 596 Pfam Phosphatidylinositol-specific phospholipase C, X domain 107 249 IPR000909 -
Vra6g0591 596 MobiDBLite consensus disorder prediction 251 322 - -
Vra6g0591 596 MobiDBLite consensus disorder prediction 251 287 - -
Vra6g0591 596 SUPERFAMILY EF-hand 16 107 IPR011992 -
Vra6g0591 596 Gene3D C2 domain 462 596 IPR035892 -
Vra6g0591 596 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 2 596 - -
Vra6g0591 596 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 359 445 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra6g0591 596 Gene3D Phosphatidylinositol (PI) phosphodiesterase 102 460 IPR017946 GO:0006629|GO:0008081
Vra6g0591 596 MobiDBLite consensus disorder prediction 301 315 - -
Vra6g0591 596 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 105 249 - -
Vra6g0591 596 Pfam Phosphoinositide-specific phospholipase C, efhand-like 25 93 IPR015359 -
Vra6g0591 596 SMART C2_3c 467 575 IPR000008 -
Vra6g0591 596 SMART plcx_3 105 249 IPR000909 -
Vra6g0591 596 CDD C2_PLC_like 465 594 - -
Vra6g0591 596 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 596 IPR001192 GO:0035556
Vra6g0591 596 Gene3D - 21 101 - -
Vra6g0591 596 ProSiteProfiles C2 domain profile. 447 577 IPR000008 -
Vra6g0591 596 PRINTS Phospholipase C signature 110 128 IPR001192 GO:0035556
Vra6g0591 596 PRINTS Phospholipase C signature 136 156 IPR001192 GO:0035556
Vra6g0591 596 PRINTS Phospholipase C signature 233 250 IPR001192 GO:0035556
Vra6g0591 596 PRINTS Phospholipase C signature 384 405 IPR001192 GO:0035556
Vra6g0591 596 PRINTS Phospholipase C signature 405 423 IPR001192 GO:0035556
Vra6g0591 596 PRINTS Phospholipase C signature 561 571 IPR001192 GO:0035556
Vra6g0591 596 SMART plcy_3 329 446 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra6g0591 596 Pfam C2 domain 468 569 IPR000008 -
Vra6g0591 596 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 467 595 IPR035892 -
Vra6g0591 596 SUPERFAMILY PLC-like phosphodiesterases 105 447 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0591 Vra-Chr6 5322058 5327145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0591 1 595 Acyl Lipid Metabolism Gene Families AT3G55940 67.107 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0591 K05857 - gmx:100037460 1070.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1081 6 16648662 16661390 Vra6g0591 6 5322058 5327145 ECH
Vra6g0591 6 5322058 5327145 Vra6g0591 6 5322058 5327145 ECH
Vra3g1206 3 12832785 12836999 Vra6g0591 6 5322058 5327145 PCT