Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1206 ATGTCCAAGCAGACTTACAGCTTTTGCTTCTGCTTCCGCCGCCGCTTCAGTCTCCCCGTGTCGGAGGCCCCTCCGGAGATAAGGACCCTTTTCGACCGTTATTCCGATGAGAATGGAATCATGACAGCCTCTCACGTCCGCGGTTTCCTGGTTGAGGTGCAGAAGGAGGAGAGTGTCACTGAGGAGGAAGCACAGGCCATCATCGATGGCCACAAGCATCTCAGCATCTTTCACCGGAGGGGTCTCAATCTTGAGAGTTTCTTCAACTACCTCTTCAGTAGCAATAATAATCCACCTCTCTCGCCTTCTCTCGGGGTGCACCAAGATATGTCTTCACCGTTGTCTCATTACTTCATTTATACTGGTCATAATTCCTATCTAACTGGGAACCAACTAAGCAGTGACTGCAGTGACGTCCCCATCATCAAGGCACTGCAGAAGGGTGTAAGGGTGATTGAATTAGATATATGGCCTAATGAATCAAAGGATGATGTGGATGTTCTTCATGGAAGGACATTGACATCTCCTGTGGCCCTCATCAAATGTTTGAGGTCTATTAAGCAGTATGCTTTTGTTGCCTCAGAATATCCAGTTGTAATAACCTTAGAAGACCACCTTACTCCCGATCTTCAGGCCAAAGTGGCTGAGATGATTACTCAAACATTTGGAGACATACTATTTTCTCCTGGCTCTGAAAGCTTGAAGGAATTTCCTTCTCCTAAATCGCTTAAAAGGAGGATTATCATATCAACCAAACCACCTAAGGAGTACATTGAGGCAAAAGAAGTTCAGGAAAAGGGGGAGGGATCACAAAAGGAAAAGCCTGTAGATGATGAAGAAGCATGGGGGAAAGAAGTTCCTAGTTTGAGAGGTGGCACTATTTCTGATCACAAGAACATCGAGGATGAGGATGATCTTGACAATGAAGATGATACTGATGAAGCAGAATATTCACGTCAAAATGCATCAGACGAATACAGACGTTTAATTGCCATTCATGCTGGGAAGCCTAAAGGTGGATTAACAGAATGCCTCAAAGTGGATCCCGATACAGTGAAACGTCTAAGTTTAAGTGAGCTACAACTTGAAAAGGCTGCTGAAACTCATGGCAAAGAAATCATAAGGTTTACTCAGCGGAATATACTGAGAGTGTATCCAAAAGGCACTCGTATTGCCTCAACAAATTATAATCCATTGATCGGGTGGATGCATGGAGCCCAGATGGTTGCATTCAACATGCAGGGATACGGTAGGTCTCTCTGGTTGATGCAGGGAATGTTCAAAGCCAATGGGGGATGTGGTTATGTTAAGAAACCAGATTTTCTGTTAAAGACTGGTCTTAATAATGAGGTCTTTGATCCTAAAGCTCGTTTGCCGGTGAAGAAAACTTTGAAAGTGACTATATATATGGGGGAAGGATGGTTTCATGATTTCAAGCACACGCACTTTGATCAATACTCACCCCCTGACTTCTATGCAAGAGTGGGGATTGCTGGAGTCCCTTATGATACTGTTATGAAAAAAACAAAGAGCGTGGAGGATAATTGGTCTCCATCATGGAATGAGGAATTTAAGTTTCCACTTTCTGTTCCAGAACTGGCTCTGCTTCGTGTAGAAGTTCATGAATATGACATGTCTGAGAAAGATGACTTTGGTGGCCAAACTTGCTTACCTGTGTGGGAACTGAGAAGTGGAATTCGTGCAGTTCCATTATATTCCCGCAAAGGAGAAAAGTACCACAATGTGAAGCTTCTAATGCGCTTTGAATTCATTTGA 1776 0.4375 MSKQTYSFCFCFRRRFSLPVSEAPPEIRTLFDRYSDENGIMTASHVRGFLVEVQKEESVTEEEAQAIIDGHKHLSIFHRRGLNLESFFNYLFSSNNNPPLSPSLGVHQDMSSPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQKGVRVIELDIWPNESKDDVDVLHGRTLTSPVALIKCLRSIKQYAFVASEYPVVITLEDHLTPDLQAKVAEMITQTFGDILFSPGSESLKEFPSPKSLKRRIIISTKPPKEYIEAKEVQEKGEGSQKEKPVDDEEAWGKEVPSLRGGTISDHKNIEDEDDLDNEDDTDEAEYSRQNASDEYRRLIAIHAGKPKGGLTECLKVDPDTVKRLSLSELQLEKAAETHGKEIIRFTQRNILRVYPKGTRIASTNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGGCGYVKKPDFLLKTGLNNEVFDPKARLPVKKTLKVTIYMGEGWFHDFKHTHFDQYSPPDFYARVGIAGVPYDTVMKKTKSVEDNWSPSWNEEFKFPLSVPELALLRVEVHEYDMSEKDDFGGQTCLPVWELRSGIRAVPLYSRKGEKYHNVKLLMRFEFI* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1206 591 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 95 IPR015359 -
Vra3g1206 591 PRINTS Phospholipase C signature 113 131 IPR001192 GO:0035556
Vra3g1206 591 PRINTS Phospholipase C signature 139 159 IPR001192 GO:0035556
Vra3g1206 591 PRINTS Phospholipase C signature 236 253 IPR001192 GO:0035556
Vra3g1206 591 PRINTS Phospholipase C signature 381 402 IPR001192 GO:0035556
Vra3g1206 591 PRINTS Phospholipase C signature 402 420 IPR001192 GO:0035556
Vra3g1206 591 PRINTS Phospholipase C signature 557 567 IPR001192 GO:0035556
Vra3g1206 591 SUPERFAMILY PLC-like phosphodiesterases 108 444 IPR017946 GO:0006629|GO:0008081
Vra3g1206 591 Gene3D Phosphatidylinositol (PI) phosphodiesterase 105 456 IPR017946 GO:0006629|GO:0008081
Vra3g1206 591 CDD C2_PLC_like 461 590 - -
Vra3g1206 591 SMART plcx_3 108 252 IPR000909 -
Vra3g1206 591 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 463 590 IPR035892 -
Vra3g1206 591 CDD PI-PLCc_plant 107 430 - -
Vra3g1206 591 Pfam C2 domain 463 565 IPR000008 -
Vra3g1206 591 SMART C2_3c 463 571 IPR000008 -
Vra3g1206 591 SMART plcy_3 326 443 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra3g1206 591 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 2 591 - -
Vra3g1206 591 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 354 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra3g1206 591 Gene3D - 22 98 - -
Vra3g1206 591 Gene3D C2 domain 458 591 IPR035892 -
Vra3g1206 591 Pfam Phosphatidylinositol-specific phospholipase C, X domain 110 252 IPR000909 -
Vra3g1206 591 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 356 442 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra3g1206 591 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 591 IPR001192 GO:0035556
Vra3g1206 591 MobiDBLite consensus disorder prediction 258 320 - -
Vra3g1206 591 SUPERFAMILY EF-hand 23 110 IPR011992 -
Vra3g1206 591 ProSiteProfiles C2 domain profile. 444 573 IPR000008 -
Vra3g1206 591 MobiDBLite consensus disorder prediction 258 285 - -
Vra3g1206 591 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 108 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1206 Vra-Chr3 12832785 12836999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1206 1 591 Acyl Lipid Metabolism Gene Families AT3G55940 67.617 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1206 K05857 - gmx:100784534 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1206 3 12832785 12836999 Vra6g0591 6 5322058 5327145 PCT