Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1081 ATGGCCACCACAACTAGACACCCTTCTCATAGAACCTCTAAACAGCACTTCAAAGTCTGTTTCTGTTTCAGGAGAATGTTTAGGCTCAAAGTGGTTGAACCCCCTGACGAAATCAACACTGTTTTTGAAGAGTATTCACATGATGGCATCATGAGCATGGATGATATGTGCAATTTCTTAGTTGAATTTCAGGGAGAAAATGAAGCTGTCACCACACATGCTCAAGCCATTTTTGACAGCCTCAAGCATCTCAACATATTTCAAAGGAGAGGCTTTCATATTGATGCCTTCTTCCGTTATCTCTTGAGTGACCTTAATGGCCCCCTTGCTGAGGTGCACCATGACATGAATGCTCCTTTGGCTCATTATTTCTTGTACACAGGTCACAACTCCTACTTAACTGGAAATCAACTTAGCAGTGCTAGCAGTACTTCTGCGATAATAAAAGCATTGAAGAAAGGAGTTAGAGTAATTGAGCTAGATTTATGGCCAAATTCCAGAGGAGACGATGTGTTAGTTCATCATGGAGGGACTCTTACTTCTTCAGTGAAACTTAGAGCTTGTCTTCTTGCCATTAAGGACTATGCATTTTTCGCCTCTCCATATCCCGTTGTTATAACTTTTGAAGACCATATCACACCATCTCTTCAAGGCAAAGTGGCTAAGATGCTCGTTGACACATTTGGAGATATGTTATTTTACCCTGAAAATCCACACCAAATGAGGGAATTTCCTTCTCCAGAAAGATTGAAGAAAAAAATTTTGATTTCAACTAAACCACCAGAGTCTTATGAAAGTCAAGACCAAAGGATACTAGAGGAAGCACCACATAGGCTTGAGGAATATCGTGACAAATCTAGACCCAATTACAAGGATGATGAAGATGAGGATGATGATGAGGATGATACTCCTGAATATAGGGATTTGATTTCTATTCGTGCAGGGAAACCTAAAGGTAAGTTAAAAAATTGTTTGATTAATCATAACCAAGTCAGACGCTTAAGCTTGAGCGAGCAAGAGCTTGAAGATATTGCCAAAAATCATGGAACTGACATTGTCAGATTCACCCAAAGAAATTTGCTTAGAATATATCCAAAAGGAACTCGTCTTGATTCGTCTAATTACGATCCCATGATTGGATGGATGCATGGAGCTCAAATGGTAGCATTTAATATGCAGGGAGGAAGGCATTATCTTAGGTACATGGAAGGAATGTTCAGAGCCAATGGTGGTTGTGGTTATGTTAAAAAACCAAACATATTATTGAATGTCAACGATATTTTTGATCCAAAAGCGTTTCGGCCAGTCCAAACAACTCTTCAGGTTTTGGTATACATGGGTGATGGGTGGCGTTCAGATTTCAGCCCAACGCATTTTGACTTTTATTCTCCTCCTGACTTCCGTGTACAGATCGGCATTCATGGAGTTCCCGCTGATAGAGATATGAAATACACAAGAACAATTGAAGATGATTGGGTACCAGTGTGGAATGAAGAGTTCAGTTTCCCATTGAGTACTCCTGAATTGGCTCTTCTATACATCAAAGTTGTTGAGCGTGACTTTTCTGGAAGCGGTGATTTTGGCGGACAAACATGTTTACCTGTCTCTCAACTCAGACAAGGCATTCGTGCAGTTCGTTTGCGCAACCGCAAGGGCGAACTTTACAAGTCTGTCAGGCTTCTCATCCAATTTCACTTTCTTACAAACACTCTATAG 1716 0.405 MATTTRHPSHRTSKQHFKVCFCFRRMFRLKVVEPPDEINTVFEEYSHDGIMSMDDMCNFLVEFQGENEAVTTHAQAIFDSLKHLNIFQRRGFHIDAFFRYLLSDLNGPLAEVHHDMNAPLAHYFLYTGHNSYLTGNQLSSASSTSAIIKALKKGVRVIELDLWPNSRGDDVLVHHGGTLTSSVKLRACLLAIKDYAFFASPYPVVITFEDHITPSLQGKVAKMLVDTFGDMLFYPENPHQMREFPSPERLKKKILISTKPPESYESQDQRILEEAPHRLEEYRDKSRPNYKDDEDEDDDEDDTPEYRDLISIRAGKPKGKLKNCLINHNQVRRLSLSEQELEDIAKNHGTDIVRFTQRNLLRIYPKGTRLDSSNYDPMIGWMHGAQMVAFNMQGGRHYLRYMEGMFRANGGCGYVKKPNILLNVNDIFDPKAFRPVQTTLQVLVYMGDGWRSDFSPTHFDFYSPPDFRVQIGIHGVPADRDMKYTRTIEDDWVPVWNEEFSFPLSTPELALLYIKVVERDFSGSGDFGGQTCLPVSQLRQGIRAVRLRNRKGELYKSVRLLIQFHFLTNTL* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1081 571 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 14 566 IPR001192 GO:0035556
Vra6g1081 571 SMART plcy_3 306 422 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra6g1081 571 PRINTS Phospholipase C signature 119 137 IPR001192 GO:0035556
Vra6g1081 571 PRINTS Phospholipase C signature 145 165 IPR001192 GO:0035556
Vra6g1081 571 PRINTS Phospholipase C signature 243 260 IPR001192 GO:0035556
Vra6g1081 571 PRINTS Phospholipase C signature 360 381 IPR001192 GO:0035556
Vra6g1081 571 PRINTS Phospholipase C signature 381 399 IPR001192 GO:0035556
Vra6g1081 571 PRINTS Phospholipase C signature 533 543 IPR001192 GO:0035556
Vra6g1081 571 Gene3D Phosphatidylinositol (PI) phosphodiesterase 113 432 IPR017946 GO:0006629|GO:0008081
Vra6g1081 571 Gene3D C2 domain 435 570 IPR035892 -
Vra6g1081 571 SMART C2_3c 439 547 IPR000008 -
Vra6g1081 571 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 14 566 - -
Vra6g1081 571 SUPERFAMILY EF-hand 26 113 IPR011992 -
Vra6g1081 571 Gene3D - 31 112 - -
Vra6g1081 571 MobiDBLite consensus disorder prediction 258 304 - -
Vra6g1081 571 Pfam Phosphoinositide-specific phospholipase C, efhand-like 36 104 IPR015359 -
Vra6g1081 571 MobiDBLite consensus disorder prediction 266 292 - -
Vra6g1081 571 Pfam Phosphatidylinositol-specific phospholipase C, X domain 116 259 IPR000909 -
Vra6g1081 571 ProSiteProfiles C2 domain profile. 416 549 IPR000008 -
Vra6g1081 571 Pfam C2 domain 468 541 IPR000008 -
Vra6g1081 571 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 335 421 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra6g1081 571 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 333 419 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra6g1081 571 SMART plcx_3 114 259 IPR000909 -
Vra6g1081 571 CDD C2_PLC_like 438 566 - -
Vra6g1081 571 SUPERFAMILY PLC-like phosphodiesterases 114 423 IPR017946 GO:0006629|GO:0008081
Vra6g1081 571 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 114 259 - -
Vra6g1081 571 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 439 566 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1081 Vra-Chr6 16648662 16661390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1081 13 567 Acyl Lipid Metabolism Gene Families AT3G55940 53.504 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1081 K05857 - gmx:100817915 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1081 6 16648662 16661390 Vra6g1081 6 16648662 16661390 ECH
Vra6g1081 6 16648662 16661390 Vra6g0591 6 5322058 5327145 ECH