Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0173 ATGATTTATTTCTTCCAAAATGCAGTCTATCTTGATGAGAAGCAAGGATTAAATGTGATTGATGCAGTAATCAATGCTTTGAGCGAGGCAGGTTATGATAAACAAGGATCCCAAAAGGTTTATATCCAATCCACTGATAGCTCTGTACTGCTAAAGTTCAAAGAGAAAACCAGTTATGAGCTTGTGTACAAGATTGACGAGACTGTCGGTGATGCTGATAATGCAGCTGTTGAGGATATAAAGAAATTTGCTAGTGCTGTGATTGTCAACAAGAACTCTGTATTTTCTAAAAATAATGAATTCCTGACAAGCACTACGAAAACCGTGCCGAAGCTAAACGCTGCCAACCTCTCNGTTTTTGTAGAGACATTCAGCAATGAGTTTGTTTCTCAAGCGTGGGATTTCTTCTCAGATGCAACTGTTGAGATAAACTCATATCTAAATGCTGATGGCCTAAAAATTGATGGTATCATCACAGACTTCCCTAAAACTGCCGACAGATACAGAAGGAACAAATGCTTAAATTTGGGTGACAAGAGACCTACTTACATGGCCCCTGTTCAACCAGGTGGTCTTTTTTCTCTCATTACCACAGATTTCTTGCCTCCAGCTCAAGCTCCACTCCCACCCTTGACAAAATCTGAAGTTGCAGTGCCACCTTTGCCTCCTGTTGCTAAAATAGCCCCAGTTTCAAGCCCCAGATCTGGAACCCCAGCACCACAAGGAAATGCACAGCCTAAGGTTGCTGTCTGCTTCTTCTTTTCCTCTCTGGCTGTGTTCATAGCTTCCCTTCTTCTGCTTTGA 804 0.4192 MIYFFQNAVYLDEKQGLNVIDAVINALSEAGYDKQGSQKVYIQSTDSSVLLKFKEKTSYELVYKIDETVGDADNAAVEDIKKFASAVIVNKNSVFSKNNEFLTSTTKTVPKLNAANLSVFVETFSNEFVSQAWDFFSDATVEINSYLNADGLKIDGIITDFPKTADRYRRNKCLNLGDKRPTYMAPVQPGGLFSLITTDFLPPAQAPLPPLTKSEVAVPPLPPVAKIAPVSSPRSGTPAPQGNAQPKVAVCFFFSSLAVFIASLLLL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0173 267 Pfam Glycerophosphoryl diester phosphodiesterase family 21 164 IPR030395 GO:0006629|GO:0008081
Vra6g0173 267 SUPERFAMILY PLC-like phosphodiesterases 10 169 IPR017946 GO:0006629|GO:0008081
Vra6g0173 267 ProSiteProfiles GP-PDE domain profile. 1 169 IPR030395 GO:0006629|GO:0008081
Vra6g0173 267 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 5 266 - -
Vra6g0173 267 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 5 266 - -
Vra6g0173 267 Gene3D Phosphatidylinositol (PI) phosphodiesterase 6 168 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0173 Vra-Chr6 1263563 1264599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0173 6 247 Receptor kinase-like Gene Family AT1G66970 52.823 2.06e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0173 - - vra:106763202 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0173 6 1263563 1264599 Vra6g0173 6 1263563 1264599 ECH
Vra6g0172 6 1250872 1257841 Vra6g0173 6 1263563 1264599 PCT
Vra6g0173 6 1263563 1264599 Vra10g0249 10 6802972 6807780 PCT