Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0172 ATGTGGAATCCACGCGCTCTCTCTGCTCCACTCGCGGTGCTTCTTCTTCTTCTTCACTGTCTCCTTGCTACCGTCTCTGCTCAGAGATCTGCCTGGAAGACACTCAGCGGAGGTCCGCCGTTGGTTGTGGCACGTGGTGGATTTTCAGGGATTTTTCCTGATTCCAGTGATAGTGCATATAATTTGGCAGTAATAACGTGTGGACCGGATGTCTATGTATGGTGTGACGTGCAGTTAACAAAAGATGCAGTTGGGATTTGCCTGCCAGACATAAACCTTTTAAATTCCACTTACATTGCTTTCTCTTACCCTAATCAAACCAAGAGTTACTTGGTTAATGGAGTACCCACCGATGGCTATTTTTCTCTGGATTACACTATGAAGCAGCTAAGCAGTGTCGCCTTAACTCAGGGAGTATACTCTCGAACCAATCGGTTTGATGGCAATGTTTTTCCAATTCTTACTGTGGATGATTTGCTTACATCTAAACAAAAACCGAAAGGAATATGGTTGAATATTCAGCACGATGCNTTCTACGCAGAGCACAATTTGAGTATGAGAAGCTTTGTGCTTTCAGCTTCTAAAAGAATAGTTTTCAGTCATATCTCATCACCCGAGGTTAATTTTCTGAGAGGTATATCATCACGCTTCAACCCGAAAACAACAAAACTGGTCTTCCGGTTCATGGCAAAGAATGATGTAGAACCATCGACCAATCAGACTTATGAATCTCTTTTAACGAATCTTACATTTATCAAGACATTTGCTTCTGGAATTCTTGTTCCGAAGGGATACATATGGCCAGTAGATGCAAGACTTTATCTACAACCACATACATCTTTGGTCTCGGATGCACATAAAGCGGGGCTGGAAGTTTTTGGATCAGATTTTGTGAATGATGTTCCATCTAGCTTCAATTACAGTTACGATCCACTTACTGAGAACCTCCAGTTCATAGACAACGGTGACTTCTCTGTTGATGGTGTGCTGTCTGATTTCCCCGTTACTGCATTTGAAGCAATAGGTTGCTTTTCTCAGTTAGGCACCAATGCCACGAAACAAGATAAAGCTTTGATTATCTCAAAATATGGAGCAAGTGGTGATTATCCTGCTTGTACCGACTTAGCATATAAGAAGGCCATCGAGTACGGTGTGGATGTTCTTGACTGTCCGGTTCAAATATCAAAGGATGGAACACCATTTTGCTTAAACTCCATTGATCTTATAGAGAGTACGACAGTTGCCCAATCAACGTTCAGCAAATTTGCCATGACTATCCCTCAGATCAAACCCACCAGTGGCATATTTGCATTCAACCTCACGTGGAGTGATATAAAAACTTTGACCCCCTCCATATTGAATCCTTATGCAAAATACAGATTGTTCAGGAATCCAGAAGCTAAGAATTTTGGGCACTTGGTGGCGTTGTCAGATTTCTTGTCCTTGACAAAAAGTGAGCCTTCTCTATCTGGTGTCTCTATCGCTGTTGAGAATGCAGCCTATCTTGCTGAGAATCAAGGATTAAGCGTGATTGATGCAGTAATCAATGCTTTGAGCGAGGCAGGTTATGATAAACCCGGATCCCAAAAGGTTTATATCCAATCCACTGATAGTTCTGTACTGCTAAACTTCAAAGAGAAAACCAGTTATGAGCTTGTGTACAACATTGACGAGACTGTCGGTGATGCTGCTAATGCAGCTGTTGAGGATATAAAGAAATTTGCTAGTGCTGTGATTGTCAANAAGAACTCTGTATTTTCTNANANTNATNNATTCCTNACAAGCACTACNAAAACNGTGCCGAAGCTAAACGCTGCCAACCTCTCGGTTTTTGTAGAGACATTCAGCAATGAGTTTGTTTCTCAAGCGTGGGATTTCTTCTCAGATGCAACTGTTGAGATAAACTCATATCTAAATGCTGATGGCCTAAAAATTGATGGTATAATCACGGACTTCCCTAAAACTGCCGACAGATACAGAAGGAACAAATGCTTAAATTTGGGTGACAAGAGACCTACTTACATGGACCCTGTTGCACCAGGTGGTCTCTTTTCTCTCATTACCACAGATTTCTTGCCTCCAGCTCAAGCTCCACTCCCACCCTTGACAGAATCTGAAGTTGCTGAGCCACCTTTGCCTCCTGTTTCTAAAATAGCCCCAGCTTCCAGCCCCAGATCTGGAACCCCAGCACCACAAGGAAATGCACAGCCTAAGGTTGCTGTCTGCTTCTTCTTTTCCTCTCTGGCTGTGCTCATAGCTTCCCTTCTTCTGCATTGA 2277 0.4247 MWNPRALSAPLAVLLLLLHCLLATVSAQRSAWKTLSGGPPLVVARGGFSGIFPDSSDSAYNLAVITCGPDVYVWCDVQLTKDAVGICLPDINLLNSTYIAFSYPNQTKSYLVNGVPTDGYFSLDYTMKQLSSVALTQGVYSRTNRFDGNVFPILTVDDLLTSKQKPKGIWLNIQHDAFYAEHNLSMRSFVLSASKRIVFSHISSPEVNFLRGISSRFNPKTTKLVFRFMAKNDVEPSTNQTYESLLTNLTFIKTFASGILVPKGYIWPVDARLYLQPHTSLVSDAHKAGLEVFGSDFVNDVPSSFNYSYDPLTENLQFIDNGDFSVDGVLSDFPVTAFEAIGCFSQLGTNATKQDKALIISKYGASGDYPACTDLAYKKAIEYGVDVLDCPVQISKDGTPFCLNSIDLIESTTVAQSTFSKFAMTIPQIKPTSGIFAFNLTWSDIKTLTPSILNPYAKYRLFRNPEAKNFGHLVALSDFLSLTKSEPSLSGVSIAVENAAYLAENQGLSVIDAVINALSEAGYDKPGSQKVYIQSTDSSVLLNFKEKTSYELVYNIDETVGDAANAAVEDIKKFASAVIVXKNSVFSXXXXFLTSTTKTVPKLNAANLSVFVETFSNEFVSQAWDFFSDATVEINSYLNADGLKIDGIITDFPKTADRYRRNKCLNLGDKRPTYMDPVAPGGLFSLITTDFLPPAQAPLPPLTESEVAEPPLPPVSKIAPASSPRSGTPAPQGNAQPKVAVCFFFSSLAVLIASLLLH* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0172 758 ProSiteProfiles GP-PDE domain profile. 357 660 IPR030395 GO:0006629|GO:0008081
Vra6g0172 758 CDD GDPD_SHV3_repeat_1 40 340 - -
Vra6g0172 758 MobiDBLite consensus disorder prediction 697 718 - -
Vra6g0172 758 Pfam Glycerophosphoryl diester phosphodiesterase family 364 655 IPR030395 GO:0006629|GO:0008081
Vra6g0172 758 Pfam Glycerophosphoryl diester phosphodiesterase family 47 334 IPR030395 GO:0006629|GO:0008081
Vra6g0172 758 SUPERFAMILY PLC-like phosphodiesterases 356 660 IPR017946 GO:0006629|GO:0008081
Vra6g0172 758 Gene3D Phosphatidylinositol (PI) phosphodiesterase 356 659 IPR017946 GO:0006629|GO:0008081
Vra6g0172 758 Gene3D Phosphatidylinositol (PI) phosphodiesterase 39 341 IPR017946 GO:0006629|GO:0008081
Vra6g0172 758 MobiDBLite consensus disorder prediction 697 732 - -
Vra6g0172 758 CDD GDPD_SHV3_repeat_2 357 659 - -
Vra6g0172 758 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 15 757 - -
Vra6g0172 758 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 15 757 - -
Vra6g0172 758 SUPERFAMILY PLC-like phosphodiesterases 39 340 IPR017946 GO:0006629|GO:0008081
Vra6g0172 758 ProSiteProfiles GP-PDE domain profile. 40 341 IPR030395 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0172 Vra-Chr6 1250872 1257841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0172 15 757 Receptor kinase-like Gene Family AT4G26690 55.200 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0172 - - gmx:100811399 1169.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0172 6 1250872 1257841 Vra6g0173 6 1263563 1264599 PCT
Vra10g0254 10 6857629 6865210 Vra6g0172 6 1250872 1257841 PCT