Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0254 ATGCAATACTTCTCTCTTTTTCTGTATATAACAAGGCATAGTACTCACGTTAAGGTGGCCAAATCACTGGACTTTTTCTCCTGCAGGTATACTCGGAACTTCGCCGGAAACTCAAACTTCGCCGGAATGTGGAACTCACGCGCTATTCTCTGTTTACTCCCTCTGCTGCATTCTCTTCTTCTTCTTCTTCATTTGGTGCTGCCTCTGGTCTCTGCTCAAGGATCCAAAACCACCTCTTGGAACACTCTCTCTGGAAGTCCACCATTGGTCATAGCACGCGGGGGATTTTCTGGGATATATCCTGACTCCAGTGATTTTGCATATAGTCTTGCTGCACAAACTAGTTTAGCAAACGTCATTGTATGGTGTGATGTGCAATTAACAAAAGATAGAGAGGGAATCTGCATTCCAAGCATCAAACTTGAAAATGCTACTGACATTAATCATATTCCTGAATTCAAAAGCAAGACTTATTCAGTTAACGGTGTACAAACCAGTGGCTATTTTTCTGTCGACTACACCCTAAAGGAGCTGCTTTCGAATGTCCTTTTGATTCAGGGAGATTATACTCGAACAAACAGGTTTGATGGCAGTAGTTGTCGAATTCTTACTGTGAATGATTTGGTTAAAAGGGAAGATCCAAACCCACCAGGATTGTGGTTGAATATTCAGCATGATGCATTCTATGCACAACACAATCTGAGTATGAAAAATTTTGTACTTACTGTTTCTAGCACAGTAAATGTCAGTTATATCTCATCACCTGAAGCTAGTTTCCTGAGAAGTTTAAGGGCAAACGTCAACCCAAGCAAAACAAAACTGGTCTTTAGGTTTCTGGAGAAAGATAAAGTAGATCCATCAACCAATCAGACTTATGGGTCGCTGTTAAAAAATTTAACATCTATCAAAACATTTGCTTCAGGAATACTTGTTCCCAAACAGTACATATGGCCTGTAGATCCATCAAGTCTTTATATACTACCACATACATCTTTGGTCTCTGATGCGCACAAAGTGGGACTGGAAGTCTTTGCCTCAGATTTTATGAATGATATCCCAATCAGCTATAATTACAGTTATGACCCTGTTGCTGAGTACCTTAATTTCATTGACAATGGAAACTTCTCTGTTGATGGTGTGCTGTCTGATTTCCCCTTAACTCCATCAGAAGCTATAGACTGCTTTGCTGACGTCGGCCTCAATGCTCCAAGGAAAGTTAACACTTTGGTTATTTCAAAATATGGAGCAAGTGGAGACTATCCTCCTTGTACCGACTTAGCATATGAGAAGGCTATTACAGATGGTGTGGATGTTCTTGACTGTCCTGTTCAAATGTCCAAGGATGGGATACCTTTTTGCTTAAGCTCTATTGATCTTATAGAGAGCACAAATGTTGCTCAATCAAGTTTCAGTAGACTTGGCAAAACTATCCCAGAGATCAAATCTGGCAATGGAATATTTACATTCGACTTGGCATGGGATGATATAAAAAGCTTGAGCCCCTTAATGTTGAACCCATATTCTATTAACAATTTGCATCGGAACCCAGAATACAACAAGAAGGGTCAATTTTTAACACTGTCAGATTTCTTGAACTTGACAAAAGCTCACACTTCCACACTAAATGTTATGATCATCATTGAGAATGCAGCTTATCTTGCAAGGAAACAAAACTTAAGTGTGACTGATGCAGTCATTGATACTTTGAGCAAATCAGGTTATGATAAACCAGGTGCTCCAAAAGTTATGATTCAATCCACTAATAGTTCTGTGCTATTGAAATTCAAAGAGAAAGCCAAATACGAGCTTGTCTACAAGATTGACGAGATAGTTGGTGGTGCTGTTGATTCAGCTATTTCGGATATCAAAAGATTTGCTCATTCTGTGGTTGTCAAAAAGGCATCTGTATATCCTGTTAGTGAATTATTCCTGGTTGCCTCTACAAAGATTGTATCAAAGTTCAAATCTTCCAATCTCTCTGTTTACGTGGAAACATTCAGCAATGAGTTTGTATCTCAGGCATGGGATTTCTTGTCAGATGCATATGTGGAGATCAACACATTTGTTCAAGATGCTGAAATTGACGGTGTCATCACAGACTTTCCAAAAACAGCTAATAGATATAGAAGGAACAAATGCTTAAATTTGGGCGATAAGACACCTCTTTACATGGAACCAGTTGCAGTAGGTGGCCTTTTGCAAGGCATGGATAAATCTCTCTTGCCACCAGCTATCGCTCCAGCCCCTCCTCTGACTGAAGATGAAGTGACAGAACCCCCTTTGCCTCCACTTTCTAAAATTTCCCCATCAAGCCCTAATTCTGGAGCAGGAGCACCACCACCACGAAATGCACAGGCTAAGGTCACTGTCTGCATCTTTTTATCCACTCTGACATTGCTTGTAGCTTCTCTTATGCTTTAG 2421 0.4015 MQYFSLFLYITRHSTHVKVAKSLDFFSCRYTRNFAGNSNFAGMWNSRAILCLLPLLHSLLLLLHLVLPLVSAQGSKTTSWNTLSGSPPLVIARGGFSGIYPDSSDFAYSLAAQTSLANVIVWCDVQLTKDREGICIPSIKLENATDINHIPEFKSKTYSVNGVQTSGYFSVDYTLKELLSNVLLIQGDYTRTNRFDGSSCRILTVNDLVKREDPNPPGLWLNIQHDAFYAQHNLSMKNFVLTVSSTVNVSYISSPEASFLRSLRANVNPSKTKLVFRFLEKDKVDPSTNQTYGSLLKNLTSIKTFASGILVPKQYIWPVDPSSLYILPHTSLVSDAHKVGLEVFASDFMNDIPISYNYSYDPVAEYLNFIDNGNFSVDGVLSDFPLTPSEAIDCFADVGLNAPRKVNTLVISKYGASGDYPPCTDLAYEKAITDGVDVLDCPVQMSKDGIPFCLSSIDLIESTNVAQSSFSRLGKTIPEIKSGNGIFTFDLAWDDIKSLSPLMLNPYSINNLHRNPEYNKKGQFLTLSDFLNLTKAHTSTLNVMIIIENAAYLARKQNLSVTDAVIDTLSKSGYDKPGAPKVMIQSTNSSVLLKFKEKAKYELVYKIDEIVGGAVDSAISDIKRFAHSVVVKKASVYPVSELFLVASTKIVSKFKSSNLSVYVETFSNEFVSQAWDFLSDAYVEINTFVQDAEIDGVITDFPKTANRYRRNKCLNLGDKTPLYMEPVAVGGLLQGMDKSLLPPAIAPAPPLTEDEVTEPPLPPLSKISPSSPNSGAGAPPPRNAQAKVTVCIFLSTLTLLVASLML* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0254 806 ProSiteProfiles GP-PDE domain profile. 88 392 IPR030395 GO:0006629|GO:0008081
Vra10g0254 806 MobiDBLite consensus disorder prediction 747 781 - -
Vra10g0254 806 Gene3D Phosphatidylinositol (PI) phosphodiesterase 407 708 IPR017946 GO:0006629|GO:0008081
Vra10g0254 806 Gene3D Phosphatidylinositol (PI) phosphodiesterase 87 391 IPR017946 GO:0006629|GO:0008081
Vra10g0254 806 Pfam Glycerophosphoryl diester phosphodiesterase family 415 704 IPR030395 GO:0006629|GO:0008081
Vra10g0254 806 Pfam Glycerophosphoryl diester phosphodiesterase family 95 386 IPR030395 GO:0006629|GO:0008081
Vra10g0254 806 SUPERFAMILY PLC-like phosphodiesterases 408 709 IPR017946 GO:0006629|GO:0008081
Vra10g0254 806 SUPERFAMILY PLC-like phosphodiesterases 87 391 IPR017946 GO:0006629|GO:0008081
Vra10g0254 806 CDD GDPD_SHV3_repeat_1 88 391 - -
Vra10g0254 806 CDD GDPD_SHV3_repeat_2 409 708 - -
Vra10g0254 806 MobiDBLite consensus disorder prediction 747 767 - -
Vra10g0254 806 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 60 805 - -
Vra10g0254 806 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 60 805 - -
Vra10g0254 806 ProSiteProfiles GP-PDE domain profile. 408 709 IPR030395 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0254 Vra-Chr10 6857629 6865210 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0254 47 806 Receptor kinase-like Gene Family AT4G26690 51.765 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0254 - - vra:106775652 1538.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0254 10 6857629 6865210 Vra6g0172 6 1250872 1257841 PCT