Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0103 ATGGGTGAAGAAGAAATACCAGATGATTCGTCACCTTTGATTCAACATCATCCTATAAGGAGAACTGGTAATCTGCAGAAGGCAGTAGCACACATAATAACTGGTGTGATAGGAGCAGGGGTGCTGTCTCTGGCATGGTCGGTGGCACAATTAGGTTGGATTGGTGGTCCTTTAATGATTTTAGTGTTTGCAGGAACAACCTTTGTTTCTGCAAACCTTCTGTCCGACTGCTACACATTTTCTCATCCTCAACATGGCAACATTAGGTGTTCCTCTCTTATGGATGCTGTTCATTTCTACCAAGGAGAGACGAAGAAAAAGGTGTGTGGAGTGCTGGTGCATGCAAGCTTATATGGTACCACCACTGCATATATCATTACTTCTGCTACCAGTATCAGAGCAATACTGAAATCAAATTGTTATCACAAGGAAGGACATCAAGCTCCTTGTAAATATGGGGATACAGAATACATGTTGCTGTTTGGACTAGTTCAGATCATAATGTCATTCATACCAGACCTTCATAACATGGCATGGGTTTCAGTTGTTGCTGCCATAATGTCCTTTGCATATTCATCTATTGGACTTGGACTTGGAATCAAAACAGTAATAGAAAATGGAAGAATTATGGGTAGTTTAACTGGAGTACCAGCTGCAAATATTTCTGACAAGCTATGGTTAATCTTCCAAGCAATTGGTGATGTTGCCTTTGCTTATCCATACTCAGTCATCCTCCTTGAGATAGAGGACACTCTCGAGTCTCCTCCACCAGAAAACAAGACCATGAAAAAGGCCTCCATGATTGCTATCCTCATTACAACATTTTTCTATCTCTGTTGTGGATGCTTTGGATATGCAGCTTTTGGAAATCAAACACCAGGGAACCTCTTGACAGGGTTTGGGTTTTATGAGCCTTATTGGCTCATTGACTTTGCTAATGCTTGCATTGTTCTTCACTTGGTGGGAGGATATCAGATTTTCTGTCAGCCGATATATGGTGCTGTTGACAGATGGTGTTCAAAAAGATACCCTAACAGTGGCTTTGTGAATAATTTCTACCAAATGAAGCTGCCTTGGTTGCCAGCTTTTCGGATAAACTTGTTCAGGATATGTTTTAGAACAGCCTATGTGATTTCCACTACTGGACTTGCGATCCTATTTCCTTACTTTAATCAAGTTCTGGGAGTGTTAGGAGCATTGGGCTTTTGGCCATTGGCTATATATTTCCCAGTAGAGATGTATTTTGTGCAGAGGAAAATTGAAGCTTGGTCTAGAAAATGGATTGTCTTAAGAACCTTCAGCTTTATTTGCTTTCTTGTGTCACTGCTAGGTCTCATTGGATCACTTGAAGGAATCATAAGCGAGAAACTAAGCTAA 1377 0.4081 MGEEEIPDDSSPLIQHHPIRRTGNLQKAVAHIITGVIGAGVLSLAWSVAQLGWIGGPLMILVFAGTTFVSANLLSDCYTFSHPQHGNIRCSSLMDAVHFYQGETKKKVCGVLVHASLYGTTTAYIITSATSIRAILKSNCYHKEGHQAPCKYGDTEYMLLFGLVQIIMSFIPDLHNMAWVSVVAAIMSFAYSSIGLGLGIKTVIENGRIMGSLTGVPAANISDKLWLIFQAIGDVAFAYPYSVILLEIEDTLESPPPENKTMKKASMIAILITTFFYLCCGCFGYAAFGNQTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQIFCQPIYGAVDRWCSKRYPNSGFVNNFYQMKLPWLPAFRINLFRICFRTAYVISTTGLAILFPYFNQVLGVLGALGFWPLAIYFPVEMYFVQRKIEAWSRKWIVLRTFSFICFLVSLLGLIGSLEGIISEKLS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0103 458 Pfam Transmembrane amino acid transporter protein 22 453 IPR013057 -
Vra6g0103 458 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 16 457 - -
Vra6g0103 458 PANTHER OS05G0424000 PROTEIN-RELATED 16 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0103 Vra-Chr6 735639 744449 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0103 19 453 Organic Solute Cotransporters AT5G09220 49.315 4.80e-167 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0103 K24917 - gmx:100786621 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0103 6 735639 744449 Vra6g0103 6 735639 744449 ECH
Vra10g0334 10 8113436 8115315 Vra6g0103 6 735639 744449 PCT
Vra6g0103 6 735639 744449 Vra10g0332 10 8065494 8069966 PCT