Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2557 ATGTTGGGAGGAATTTTCGGAGGAAACAAGCAGAAGATAAAGGGCACTGTGGTGCTTATGCGAAAGAATGTTTTGGACATCAACAGCATCCTCAACCCTGCCAGCGTCATCGACAACGTCTTCGATTTCGCCGGCACTCTTGTCGACGCCGTCACTGCTTTCGCCACCTCCATCTCCATCCAGCTCATCAGTTCCACCAAGGCTGATGGACAAGGGAAAGGAAAAGTTGGAACAACTACGAAGTTAAGAGGACAGATATCATTGCCAACGTTGGGAGCGAGTGAAGAAGCATACGATGTTAATTTTGAATGGGACAGTGACTTCGGAATTCCCGGCGCATTTTACATTAAGAATTTCATGCAAAATGAGTTCTACCTCAAATCTCTCACTCTCGAAGACATTCCTAACCACGGAACCATTCACTTCATCTGCAACTCCTGGGTTTACAATAATACTAAATACAAAACTCCTCGTATTTTCTTTGCCAACAACACGTATCTTCCTAGCGAGACACCAGCCCCACTTGTGAAGTACAGAGAAGAAGAATTGAAGGTTGTAAGAGGCGATGGAACTGGAGAACGAAAGGAATGGGATAGAATTTATGATTATGATGTCTACAATGACTTGGGCAACCCAGATAAAAGTGAAGCCTATGCTCGCCCTGTTCTTGGAGGTTCTACTTTGCCTTACCCTCGTAGAGGAAGAACTGGAAGACCCAAAACTAAAAAAGATCCTAACAGTGAGAAGCCTAGCGACTTTGTTTACCTTCCAAGAGACGAAGCGTTTGGTCACTTGAAGTCATCCGATTTTCTCGCTTATGCATTGAAATCGGTATCCCAAGATGTGTTACCAGTCTTGACTGATGCATTCGATGGAAATATTCTGAGTCTTGAGTTTGATAATTTCGCTGAAGTGCGCAAGCTTTATGAAGGTGGAGTTACATTGCCCACAAACTTTCTCAGCAAATACGCTCCCATACCAATTGTCAAGGAACTTTTTCGAAGTGATGGTGAACAGTTTCTCAAGTATCCACCACCTAAAGTCATGCAAGTGGATAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAACCATTGCTGGAGTCAATCCTAATGTCATTAAGATTCTTAAGGAATTCCCACCAAGTAGCAAGCTAGACACTCAAGCCTTTGGTGACCATACCTCTATAATAAAGAAAGAGCATTTGGAGCCTCAATTAGGAGGGCTCACTGTTGAGCAGGCTATCGAGAACAATAAGTTGTTCATCTTAGATCACCATGACTATCTCATTCCATATTTGAGGAAAATAAATTCATCTACCACAAAGACTTATGCTACGAGAACCATATTTTTCTTGAAAGAGGATGGAACACTGACACCATTGGCCATCGAGTTAAGTAAGCCACATGGTCAGGGTGACGAATTCGGTCCTATCAGTGAAGTCTATGTGCCTGCATACGAGGGAGTGGAAGCTTACATTTGGTTACTGGCAAAGGCTTATGTTGTTATCAATGACTCGTGCTACCATCAAATCATCAGCCATTGGCTAAGCACTCATGCAGTTGTTGAGCCTTTCGTCATAGCAACGAACAGGCAATTGAGTGTGGTTCACCCTGTTTACAAGCTCCTGTTTCCTCACTACCGTGATACCATGAACATCAATTCACTGGCCCGCAAGTCCTTGGTCAACGCAGATGGTATCATCGAGAAAACATTCTTGTGGAGTAGGTACTCTTTGGAAATGTCTGCTGTGATATACAAGGACTGGTCTTTCGTTGATCAAGCATTACCCAATGATCTTCTCAAGAGAGGAGTTGCAGTTAAAGATGCATCTGCTCCCCACGGTGTTAAGCTTTTGATTGAGGATTATCCTTATGCTTCTGATGGGCTGGAGATATGGGCAGCCATCAAGTCGTGGGTGGAAGAGTATGTGGCATTCTATTACAAGTCAGATGAGGTACTTCAAAAAGACCCTGAACTTCAAGCTTGGTGGAAAGAACTTGTTCAGGTGGGTCATGGTGATCTGAAAGATAAGCCATGGTGGCCAAAGTTGCAAACACGTGGAGAGTTGGTTGACGTCTCCACTACCCTCATTTGGATATCTTCAGCCCTTCATGCAGCTGTTAACTTCGGACAATATCCATACGGTGGTTTAATCCTGAACAGGCCAACCATTAGCAGAAGATTCATGCCTGAGAAAGGGTCTGCTGAATATGAGGCATTGGCTAAGAATCCAGAGAAGGAGTTTTTGAGAACTATTACTGGTAAGAAAGAGACCCTGATTGACCTTACAGTTATAGAGATATTGTCAAGGCATGCATCTGATGAGTTCTACCTTGGAGAGAGAGATGGTGGTGACTTTTGGACTTCAGATGCAGGGCCATTGGAGGCCTTTAAGAGGTTCGGAAAGAAGCTTGCTGAAATTGAACAAAAGCTTGTACAGAAAAACAATGATGAGACATTGAGAAACCGCACTGGACCTGCTAAAATGCCTTACACTCTTCTCTTTCCTTCCAGTGAGGAGGGATTGACCTTCAGAGGAATCCCCAATAGTATTTCTATCTAA 2571 0.4356 MLGGIFGGNKQKIKGTVVLMRKNVLDINSILNPASVIDNVFDFAGTLVDAVTAFATSISIQLISSTKADGQGKGKVGTTTKLRGQISLPTLGASEEAYDVNFEWDSDFGIPGAFYIKNFMQNEFYLKSLTLEDIPNHGTIHFICNSWVYNNTKYKTPRIFFANNTYLPSETPAPLVKYREEELKVVRGDGTGERKEWDRIYDYDVYNDLGNPDKSEAYARPVLGGSTLPYPRRGRTGRPKTKKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYALKSVSQDVLPVLTDAFDGNILSLEFDNFAEVRKLYEGGVTLPTNFLSKYAPIPIVKELFRSDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGVNPNVIKILKEFPPSSKLDTQAFGDHTSIIKKEHLEPQLGGLTVEQAIENNKLFILDHHDYLIPYLRKINSSTTKTYATRTIFFLKEDGTLTPLAIELSKPHGQGDEFGPISEVYVPAYEGVEAYIWLLAKAYVVINDSCYHQIISHWLSTHAVVEPFVIATNRQLSVVHPVYKLLFPHYRDTMNINSLARKSLVNADGIIEKTFLWSRYSLEMSAVIYKDWSFVDQALPNDLLKRGVAVKDASAPHGVKLLIEDYPYASDGLEIWAAIKSWVEEYVAFYYKSDEVLQKDPELQAWWKELVQVGHGDLKDKPWWPKLQTRGELVDVSTTLIWISSALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSAEYEALAKNPEKEFLRTITGKKETLIDLTVIEILSRHASDEFYLGERDGGDFWTSDAGPLEAFKRFGKKLAEIEQKLVQKNNDETLRNRTGPAKMPYTLLFPSSEEGLTFRGIPNSISI* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2557 856 ProSiteProfiles PLAT domain profile. 36 162 IPR001024 GO:0005515
Vra5g2557 856 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 9 856 - -
Vra5g2557 856 Pfam Lipoxygenase 175 839 IPR013819 GO:0016702|GO:0046872
Vra5g2557 856 Pfam PLAT/LH2 domain 66 161 IPR001024 GO:0005515
Vra5g2557 856 Gene3D - 266 354 IPR027433 -
Vra5g2557 856 Gene3D - 355 488 - -
Vra5g2557 856 MobiDBLite consensus disorder prediction 217 252 - -
Vra5g2557 856 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 166 IPR036392 GO:0005515
Vra5g2557 856 ProSitePatterns Lipoxygenases iron-binding region signature 1. 511 525 IPR020833 GO:0016702|GO:0046872
Vra5g2557 856 PANTHER LIPOXYGENASE 9 856 IPR000907 GO:0016702|GO:0046872
Vra5g2557 856 SMART LH2_4 11 163 IPR001024 GO:0005515
Vra5g2557 856 Gene3D - 489 855 - -
Vra5g2557 856 PRINTS Plant lipoxygenase signature 132 150 IPR001246 GO:0016491
Vra5g2557 856 PRINTS Plant lipoxygenase signature 158 179 IPR001246 GO:0016491
Vra5g2557 856 PRINTS Plant lipoxygenase signature 197 213 IPR001246 GO:0016491
Vra5g2557 856 PRINTS Plant lipoxygenase signature 229 248 IPR001246 GO:0016491
Vra5g2557 856 PRINTS Plant lipoxygenase signature 296 317 IPR001246 GO:0016491
Vra5g2557 856 PRINTS Plant lipoxygenase signature 341 357 IPR001246 GO:0016491
Vra5g2557 856 PRINTS Plant lipoxygenase signature 380 399 IPR001246 GO:0016491
Vra5g2557 856 PRINTS Plant lipoxygenase signature 446 470 IPR001246 GO:0016491
Vra5g2557 856 PRINTS Plant lipoxygenase signature 768 782 IPR001246 GO:0016491
Vra5g2557 856 Gene3D - 167 265 - -
Vra5g2557 856 Gene3D PLAT/LH2 domain 5 166 - -
Vra5g2557 856 PRINTS Lipoxygenase signature 493 510 IPR013819 GO:0016702|GO:0046872
Vra5g2557 856 PRINTS Lipoxygenase signature 511 528 IPR013819 GO:0016702|GO:0046872
Vra5g2557 856 PRINTS Lipoxygenase signature 531 551 IPR013819 GO:0016702|GO:0046872
Vra5g2557 856 ProSitePatterns Lipoxygenases iron-binding region signature 2. 538 548 IPR020834 GO:0016702|GO:0046872
Vra5g2557 856 CDD PLAT_LH2 12 163 IPR042057 -
Vra5g2557 856 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 165 856 IPR013819 GO:0016702|GO:0046872
Vra5g2557 856 SUPERFAMILY Lipoxigenase 167 856 IPR036226 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2557 Vra-Chr5 32363970 32367971 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2557 7 856 Acyl Lipid Metabolism Gene Families AT1G55020 57.209 0.0 1001
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2557 K15718 - gmx:547860 1520.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2557 5 32363970 32367971 Vra9g0289 9 2222718 2236903 PCT
Vra9g0287 9 2173612 2177336 Vra5g2557 5 32363970 32367971 PCT