Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0289 ATGTTTGGGATATTGAACAGGGGTCACAAGATAAAGGGGACTGTGGTGTTGATGACGAAGAATGTGTTTGACTTCAATGAATTTGTGTCGAGTACGAGGGGTGGAATAGCTGGTGCTGCCGGAGGTCTCTTTGGTGCTGCCACTGACATTGTTGGAGGAATAGTTGATGGTGCCACTGCCATCTTCAGCCGCAACATTGCCATTCAGCTCATCAGTGCAACCAAAACTGATGGGCTTGGAAATGGAAAGGTTGGAAAACAAACCTTTTTGGAGAAGCATCTTCCTTCGTTACCAAACTTGGGAGATAGACAAGATGCATTCAATGTTTATTTTGAATGGGATGAGAGTTTTGGAATTCCAGGAGCATTTTACATCAAAAACTTTATGCAATCTGAGTTTTTTCTTGTCAGTCTCACTCTTGAAGACATTCCAAATCATGGAACCATTCGCTTTGTTTGCAACTCATGGGTTTATAACGCTAAATCTTACCAAAAGGATCGCATTTTCTTTGTTAACAAGACATATCTTCCAAATGAAACTCCAACTTCACTGGTAAAGTACAGAAAAGATGAACTGGACAATCTTAGAGGAGATGGAAAAGGGGAGCGCAAGGAATATGACAGAATCTATGACTATGATGTTTACAATGATTTGGGCAACCCAGACAATAACAAGAGTCTAGCTCGTCCTGTTCTTGGAGGGTCTAGTGATTTTCCATACCCTCGCAGGGGAAGAACTGGTAGAAAATCAACAAGAACAGACCGTAACAGTGAGGTACCAACCAGTGACACCTACATTCCAAGAGATGAAAACTTTGGTCATTTGAAGTCGTCAGACTTTCTTACATATGCAATAAAGTCCTTAACTCAAAACGTGCTACCTACATTTCAAAAAGCATTCGGTTTCAACAATGAGTTTGATACATTTGAAGACGTGCGTGGACTCTTTGAAGGTGGAGTTTACCTCCCTACAGATGTAATCAGCAAAATTAGCCCCATACCAGTGCTGAAGGAAATCTTCCGCACTGATGGTGAGCAAGTTCTCAAGTTTCCACCACCTCATGTCATCAGAGTTAGTAAGTCTGCATGGATGACTGATGAAGAATTTGGAAGAGAGATGTTGGCTGGTGTAAATCCTTGCCTAATTCAATGCCTTCAAGAGTTCCCTCCAAAAAGCAAGTTAGATGTTACAAGCTATGGTGATCAAACTAGTACAATAACTAAAGAACACTTGGAGATCAACCTTGGTGGACTCACTGTGGAACAGGCACTGAAGGGTAACAGATTGTTCTTATTAGATCATCATGATGCATTCATACCATATTTAGAAAGGATCAATGACCTTCCCACTGCAAAGTGTTATGCCACAAGAACTATACTTTTCTTGAAAGATGACAACACATTGAAGCCACTGGCCATTGAATTAAGTTTGCCAAATCCTGGGGGAAATGGTGCCAATAGTAGAGTCATCTTGCCTGCAGAACAAGGTGCCGAAAGCACAATTTGGCTACTTGCAAAGGCTTATGTTGTTGTAAATGACGCCTGCTACCATCAACTCATGAGCCATTGGTTGAATACTCATGCCGTGATGGAGCCGTTTGTGATAGCAACAAACAGACAATTGAGTGTGCTCCACCCTATTTATAAACTCTTATTGCCTCATTATCGTGACACTATGAATATCAATGCCCTTGCACGACAATCGCTCATCAACGCAGGTGGCGTTATTGAGCGATCGTTTTTGCCTGGCAAATTTGCTGTAGAGATGTCTTCAGCAGTTTACAAGAACTGGGTTTTCACTGATCAAGCCCTTCCAGCAGATCTTATCAAGAGAGGAATGGCAGTTGAGGATCCATCCTCTCCCTATGGCCTCCGGCTTGTGGTTGAGGACTACCCTTATGCTGTTGATGGACTAGAAATATGGGATACTATTCAAACTTGGGTTAAAGACTATGTCTCCCTGTATTATCCCACAAATGATGCAGTTAAGAAAGACACTGAACTCCAAGCTTGGTGGAAGGAAGCTGTTGAGAAAGGTCATGGTGACTTGAAAGATAAGCCATGGTGGCCAAAGTTGAACACTCCTCAAGATTTGATTCACACTTGCTCCATTATTATATGGATTGCTTCAGCTCTTCATGCAGCTGTGAATTTTGGACAATATCCTTACGGAGGATTCATCCTAAACCGGCCTACTATAACCAGAAGATTGCTGCCTGATCCAGGAACCAAAGAATATGATGAGCTGACCAAAAATTATCAAAAGGCTTACTTGAGAACAGTTACAGGGAAGGTTGAGGCCCTTGTGGATCTTTCAGTGATAGAGATATTATCAAGACATGCTTCTGATGAGGTGTACCTTGGACAGAGGGACAATCCAAATTGGACTGATGACAAAAAAGCACTTCAAGCTTTTGAAAAGTTTGGAGAAAAGCTGAAGGTAATTGAAGATAAAATCATGGAGAGGAACAAAGATTCAAGTCTTAGAAACCGTAATGGACCAGTTCAGATGCCTTACACTTTGCTTGTTCCTAGCTGTGAAGATGAAGGTCTCACTTTCAGAGGAATTCCCAACAGTATCTCTATCGGTAGAAAGCAGAAAGAAGGCAGAAAGATGGTGTTTGGAATCTTAGGAGGAAATAGTGATGAGATAAAGGGGACAGTGGTGTTGATGAGCAAGAATGTGTTGGACTTCAATGAGATAGTTTCTACTGCTAATGGTGGAGTTGGTGGTATTGTTGGTGGCATCTTTGGAACTGCAACCAAAGTAGTTGGAGGAATAGCTGATACTGCCACCTCCATCTTCAGCCGCAACATTGCCATACAGTTGATCAGTGCCACCAAGACCGATGGGCTTGGAAATGGAAAGGTTGGAAAGCTAACTTATTTGAATAATCATCTTCCTACCTTACCAACCTTGGGAGATAGACAAAATGCATTCAGTGTTAACTTTGAATGGGATGAGAGTTTTGGAATTCCAGGAGCATTTTACATAAAAAATTATTTGCAATCTGGTGAGTTTTTTCTAGTGAGTCTCACTCTTGAAGATATTCCAAATCATGGAACCATTCACTTTGTTTGCAACTCATGGGTCTACAACTCAAAAGAGTACAAAAAGGACCGTCTTTTCTTTGTCAACAAGACTTATGTTCCAAGTGAAACTCCAACTCCACTAGTTAAGTACAGAAAAGAAGAATTGGAAAACCTAAGAGGGGATGGAACCGGGCAGCGTAAGGAATCTGATAGGATATATGATTATGATGTGTATAATGATTTGGGCAACCCAGACAAGAGTGCAGATCTTGCTCGTCCTGTTCTTGGAGGTTCCAGTGCCTATCCATACCCTCGCAGAGGAAGAACTGGCAGAAAACCAACAAAAAGAGACCCTAAGAGTGAGTCTCCGGCCAGCGACACTTACATTCCAAGAGATGAAAACTTTGGTCATTTGAAGTCATCAGACTTTCTTACGTATGGGATAAAGTCCTTGGCTCAGAATGTCTTACCTCAATTTCAATCTGCATTTGGTTTGAATGCGGAGTTTGATAAGTTTGATGATGTTCGTGGACTCTTTGAAGGTGGACTTTCTCTTCCTACAGATGTGATCAGCAAAATTAGCCCCATACCAGTGATAAAGGAAATTTTCCGCACTGATGGTGAACAAGTCCTCAAGTTTCCACCACCCCATGTCATCAGAGTTAGTAAGTCTGCATGGATGACTGATGATGAATTTGGAAGAGAGATGCTTGCTGGTGTTAATCCTGGCCTAATTCAACGCCTTCAAGAGTTCCCTCCAAAAAGCAAGCTAGATGCTTCTGTGTATGGTGATCAAACTAGCACAATCACCAAAGAACATTTGGAGAACAACCTTGGTGGACTCACCGTGGATGAGGCTTTGAATGTTGACCGATTGTTCATATTAGATCACCATGATGCATTTTTGCCATATCTGAGGAAGATCAATGACCTACCCACTGCAAAGTCTTATGCCACAAGGACAATTCTTTTCTTGAAAGATGATGGCACATTGAAGCCTTTGGCTATTGAATTAAGTCTACCACATCCTAGGGGAGATGAGTTTGGTGCTGTTAGCAGAGTTATCCTACCTGCAGACGAAGGCGCTGAAAGCACAATTTGGCTACTGGCTAAGGCTTATGTTGTTGTAAATGACTCTTGCTATCACCAACTCATGAGCCACTGGTTAAATACTCATGCCACAATTGAGCCATTTGTCATAGCAACAAATAGGCATCTCAGTGTGCTCCACCCTATTCATAAACTCTTGCTGCCTCACTATCGTGACACCATGAATATCAATGCACTTGCACGACAATCACTCATCAATGCAGGTGGTATTATTGAGCAATCATTTTTGCCCGGGCCATTCGCTGTGGAGATGTCTTCAGCAGTTTACAAAAGTTGGGTTTTCACTGATCAGGCTCTTCCTGCTGATCTTCTTAAGAGAGGAATGGCAATTGAGGATCCATCTTCTCCCCATGGCCTTCGTCTTGTGATAGATGACTACCCTTATGCTGTTGATGGACTAGAGATATGGAGTGCTATCCAGTCATGGGTTAAAGACTATGTTTCAATTTACTATGCCACAGATGATGCAATTAAGAAAGACACAGAACTCCAAACATGGTGGAAGGAAGCTGTTGAGAAGGGTCACGGTGATTTGAAAGATAAGCCATGGTGGCCTAAGTTGAACACTATTCAAGATCTGATTAACATTTCCAGCATTATCATATGGATTGCTTCAGCTCTCCATGCAGCTGTTAATTTTGGACAGTACCCTTATGGAGGGTACATCCTAAACCGTCCAACTTTAACCAGAAGATTGCTCCCAGAGCCAGGAACCAAAGAATATGATGAGCTGAGCAGCAATTATCAAAAGGCTTATCTGAGAACAATTACAGGAAAATATGAGGCCCTTGTGGACCTTTCAGTGATAGAGATATTATCAAGACATGCTTCTGATGAGGTGTACCTTGGACAGAGGGACAATCCAAATTGGACTGATGACACAAAGGCTCTTCAAGCTTTCCAAAAGTTTGGAAACAAGCTGAAGGAGATTGAGAGTAAAATCTCAGCAAGGAACAACAATTCAAGTCTTAGAAACCGTGTTGGACCGGTTCAGGTGCCTTACACTGTGCTTCTTCCAACCAGTGAAGAAGGTCTTACTTTCAGAGGAATTCCCAACAGCATCTCTATTTAA 5214 0.4198 MFGILNRGHKIKGTVVLMTKNVFDFNEFVSSTRGGIAGAAGGLFGAATDIVGGIVDGATAIFSRNIAIQLISATKTDGLGNGKVGKQTFLEKHLPSLPNLGDRQDAFNVYFEWDESFGIPGAFYIKNFMQSEFFLVSLTLEDIPNHGTIRFVCNSWVYNAKSYQKDRIFFVNKTYLPNETPTSLVKYRKDELDNLRGDGKGERKEYDRIYDYDVYNDLGNPDNNKSLARPVLGGSSDFPYPRRGRTGRKSTRTDRNSEVPTSDTYIPRDENFGHLKSSDFLTYAIKSLTQNVLPTFQKAFGFNNEFDTFEDVRGLFEGGVYLPTDVISKISPIPVLKEIFRTDGEQVLKFPPPHVIRVSKSAWMTDEEFGREMLAGVNPCLIQCLQEFPPKSKLDVTSYGDQTSTITKEHLEINLGGLTVEQALKGNRLFLLDHHDAFIPYLERINDLPTAKCYATRTILFLKDDNTLKPLAIELSLPNPGGNGANSRVILPAEQGAESTIWLLAKAYVVVNDACYHQLMSHWLNTHAVMEPFVIATNRQLSVLHPIYKLLLPHYRDTMNINALARQSLINAGGVIERSFLPGKFAVEMSSAVYKNWVFTDQALPADLIKRGMAVEDPSSPYGLRLVVEDYPYAVDGLEIWDTIQTWVKDYVSLYYPTNDAVKKDTELQAWWKEAVEKGHGDLKDKPWWPKLNTPQDLIHTCSIIIWIASALHAAVNFGQYPYGGFILNRPTITRRLLPDPGTKEYDELTKNYQKAYLRTVTGKVEALVDLSVIEILSRHASDEVYLGQRDNPNWTDDKKALQAFEKFGEKLKVIEDKIMERNKDSSLRNRNGPVQMPYTLLVPSCEDEGLTFRGIPNSISIGRKQKEGRKMVFGILGGNSDEIKGTVVLMSKNVLDFNEIVSTANGGVGGIVGGIFGTATKVVGGIADTATSIFSRNIAIQLISATKTDGLGNGKVGKLTYLNNHLPTLPTLGDRQNAFSVNFEWDESFGIPGAFYIKNYLQSGEFFLVSLTLEDIPNHGTIHFVCNSWVYNSKEYKKDRLFFVNKTYVPSETPTPLVKYRKEELENLRGDGTGQRKESDRIYDYDVYNDLGNPDKSADLARPVLGGSSAYPYPRRGRTGRKPTKRDPKSESPASDTYIPRDENFGHLKSSDFLTYGIKSLAQNVLPQFQSAFGLNAEFDKFDDVRGLFEGGLSLPTDVISKISPIPVIKEIFRTDGEQVLKFPPPHVIRVSKSAWMTDDEFGREMLAGVNPGLIQRLQEFPPKSKLDASVYGDQTSTITKEHLENNLGGLTVDEALNVDRLFILDHHDAFLPYLRKINDLPTAKSYATRTILFLKDDGTLKPLAIELSLPHPRGDEFGAVSRVILPADEGAESTIWLLAKAYVVVNDSCYHQLMSHWLNTHATIEPFVIATNRHLSVLHPIHKLLLPHYRDTMNINALARQSLINAGGIIEQSFLPGPFAVEMSSAVYKSWVFTDQALPADLLKRGMAIEDPSSPHGLRLVIDDYPYAVDGLEIWSAIQSWVKDYVSIYYATDDAIKKDTELQTWWKEAVEKGHGDLKDKPWWPKLNTIQDLINISSIIIWIASALHAAVNFGQYPYGGYILNRPTLTRRLLPEPGTKEYDELSSNYQKAYLRTITGKYEALVDLSVIEILSRHASDEVYLGQRDNPNWTDDTKALQAFQKFGNKLKEIESKISARNNNSSLRNRVGPVQVPYTVLLPTSEEGLTFRGIPNSISI* 1738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0289 1737 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 175 IPR036392 GO:0005515
Vra9g0289 1737 ProSitePatterns Lipoxygenases iron-binding region signature 1. 1393 1407 IPR020833 GO:0016702|GO:0046872
Vra9g0289 1737 ProSitePatterns Lipoxygenases iron-binding region signature 2. 1420 1430 IPR020834 GO:0016702|GO:0046872
Vra9g0289 1737 PANTHER LIPOXYGENASE 876 1737 IPR000907 GO:0016702|GO:0046872
Vra9g0289 1737 PANTHER LIPOXYGENASE 3 862 IPR000907 GO:0016702|GO:0046872
Vra9g0289 1737 ProSitePatterns Lipoxygenases iron-binding region signature 2. 544 554 IPR020834 GO:0016702|GO:0046872
Vra9g0289 1737 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 862 IPR013819 GO:0016702|GO:0046872
Vra9g0289 1737 Gene3D - 1371 1736 - -
Vra9g0289 1737 Gene3D - 495 861 - -
Vra9g0289 1737 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 1048 1737 IPR013819 GO:0016702|GO:0046872
Vra9g0289 1737 Gene3D PLAT/LH2 domain 875 1049 - -
Vra9g0289 1737 Gene3D PLAT/LH2 domain 1 175 - -
Vra9g0289 1737 Gene3D - 1050 1149 - -
Vra9g0289 1737 Gene3D - 176 275 - -
Vra9g0289 1737 Gene3D - 1236 1370 - -
Vra9g0289 1737 Gene3D - 362 494 - -
Vra9g0289 1737 ProSiteProfiles PLAT domain profile. 917 1045 IPR001024 GO:0005515
Vra9g0289 1737 PANTHER LIPOXYGENASE 3 862 - -
Vra9g0289 1737 PANTHER LIPOXYGENASE 876 1737 - -
Vra9g0289 1737 MobiDBLite consensus disorder prediction 1095 1144 - -
Vra9g0289 1737 Pfam Lipoxygenase 184 844 IPR013819 GO:0016702|GO:0046872
Vra9g0289 1737 Pfam Lipoxygenase 1058 1720 IPR013819 GO:0016702|GO:0046872
Vra9g0289 1737 ProSiteProfiles PLAT domain profile. 44 171 IPR001024 GO:0005515
Vra9g0289 1737 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Vra9g0289 1737 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Vra9g0289 1737 PRINTS Lipoxygenase signature 537 557 IPR013819 GO:0016702|GO:0046872
Vra9g0289 1737 SUPERFAMILY Lipoxigenase 1051 1737 IPR036226 -
Vra9g0289 1737 Pfam PLAT/LH2 domain 954 1044 IPR001024 GO:0005515
Vra9g0289 1737 Pfam PLAT/LH2 domain 81 170 IPR001024 GO:0005515
Vra9g0289 1737 Gene3D - 276 361 IPR027433 -
Vra9g0289 1737 Gene3D - 1150 1235 IPR027433 -
Vra9g0289 1737 CDD PLAT_LH2 9 172 IPR042057 -
Vra9g0289 1737 PRINTS Plant lipoxygenase signature 1015 1033 IPR001246 GO:0016491
Vra9g0289 1737 PRINTS Plant lipoxygenase signature 1041 1062 IPR001246 GO:0016491
Vra9g0289 1737 PRINTS Plant lipoxygenase signature 1080 1096 IPR001246 GO:0016491
Vra9g0289 1737 PRINTS Plant lipoxygenase signature 1113 1132 IPR001246 GO:0016491
Vra9g0289 1737 PRINTS Plant lipoxygenase signature 1177 1198 IPR001246 GO:0016491
Vra9g0289 1737 PRINTS Plant lipoxygenase signature 1222 1238 IPR001246 GO:0016491
Vra9g0289 1737 PRINTS Plant lipoxygenase signature 1261 1280 IPR001246 GO:0016491
Vra9g0289 1737 PRINTS Plant lipoxygenase signature 1328 1352 IPR001246 GO:0016491
Vra9g0289 1737 PRINTS Plant lipoxygenase signature 1650 1664 IPR001246 GO:0016491
Vra9g0289 1737 SUPERFAMILY Lipoxigenase 176 862 IPR036226 -
Vra9g0289 1737 SMART LH2_4 882 1046 IPR001024 GO:0005515
Vra9g0289 1737 SMART LH2_4 9 172 IPR001024 GO:0005515
Vra9g0289 1737 MobiDBLite consensus disorder prediction 221 267 - -
Vra9g0289 1737 ProSitePatterns Lipoxygenases iron-binding region signature 1. 517 531 IPR020833 GO:0016702|GO:0046872
Vra9g0289 1737 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 883 1049 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0289 Vra-Chr9 2222718 2236903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0289 10 862 Acyl Lipid Metabolism Gene Families AT1G55020 57.258 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0289 K15718 - gmx:100127399 1524.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2557 5 32363970 32367971 Vra9g0289 9 2222718 2236903 PCT