Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0287 ATGAGTTCAATAGTGGAAAAGAAAAAGTTGGTGAAGGGGAGAGTGGTGTTGATAAGGAAGAGTGTGGTTCAAACCCTAAGCACTCCTAAGGGTATTCTTGCCACTGGCATCAAGATAATTAACGACTCACCCCAACTTGATATCACTAAGTCTGTGTCTTTCAAGTTGATTAGTAGTTCCAAGTCAGAGAATGAAAGTAATTCAGCTGGGAAAGTTGGAAAGGATGCCTATTTGGAGAATAATGTTTCTGTGTTACGAACTTTGAAAGAGACACGGGAGGAATACGATATTTATTTTGAATGGGATGATGAAGATATGGGAACTCCAGGTGCATTTTATGTAACAAACAAAATGAATGAAGAGTTCTTCCTAGTTAGTGTCACTATTGAATATCCAAGTGAACACGACAAGAACAATATTATTCACTTNGACTGTAATTCCTGGGTTCACAACGATAAGCGTAGCGAAACAGGTCGCATATTCTTCGCCAACATTTCATATCTTCCTGGTGAGACACCGGTGCAATTACAAGCGTACAGACAAAAGGAGTTGGAGAATTTAAGGGGAAATGGAACTGGAAAGCGTGAGAAAGGGGATAGGATTTATGATTATGATGTCTATAATGATCTGGGCTTTCTTGAAAGCGATAGACAAGAACATCACCCAGTTCTTGGAGGTCTCAAATATCCCTACCCTCGTAGGGTTAGGACGGGGAGACCCCTCATCGAAAGAAATGGTGAAAAATACGAGGTACCAGACGAGGTTTATTATGTGCCAAGAGATGAAGATTTCAGTCAGCAGAAGACTTTAGAATTCCTTGAATTATCAAGGAAAGCTTTAGGTGGAAAAGTGAAACCTTTGCTCCTATCTTTGTATTTAAAGACAACATCAAATGAATTTAACAGCTTCGAAGAAATGCTGAAAATGTATGAAGGTGGAAATCCAAGTGTCATTGACTTCCCAACTCCTGATGTAATCAAAGAGAGCAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAGATGATTGCTGGTGTAAACCCTCATGTAATTCGGCTTCTTAAAAAGGAGGACCTCGCATTTCCAGGGAACACATCACGAAGTACAGTAACAAAAGAAACTTTGGAGATTAACATGAATGGAGTCAAAGTAGATGAGGCATTTGCTAATAATAAATTGTTCATATTGGATTACTATGACGCATTCATGCCGTATTTGGAGAAGATAAATGAACTTCCTTCTGCAAAGGCTTATGCCACCAGGACATTCTTGTTCTTAAAAGATGATACATTGAAACCACTTGCTATTGAATTAAGCAAGCCACATCCGAATGACGAGACCAAAGTGGTGCTGCCTGCAGACAATGGTGTGGACGGTATAATTTGGTTATTGGCCAAAGCTCATGTTGTTGTAAATGACACCAACTATCATCAGCTCATAAGCCACTGGTTACATACTCACGCAGTGATTGAGCCATTTGTCATATCAACACACAGGAATCTCAGTGTACTTCACCCCATTTACAAACTCCTTCATCCTCACTTCCGTGACACCTTAAATATAAATTCACTTGCCAGGAAGACCCTAATTAGTGCAGGTAGCATCATAGAGCAAACTTTTTTGCCTGGACCATATTCTATGGTGATGTCTTCTGCTATATACAAGAATTGGGTTTTCGCTGACCAAGCATTACCAAAGGATCTCATCAAAAGAGGATTGGCGGTTGAGGATACAACTGCCCCTCATGGCCTTAAACTTGCGATAGAGGACTATCCTTATGCTGTTGATGGACTAGAAATATGGAATGCTACTGAGAAGTGGGTACAAGAGTATGTGTCTCTGTACTATTCAGAGGAGGGAGCAGTTCAAAGAGATACTGAATTGCAAGCATGGTGGAAGGAAGCTGTGGAGAAGGGTCATGGTGACTTAAAAGCAGATCTATGGCCAAAAATGCATACTTCTAATGATCTGGTGGAGATTTGCACTACCATTATATGGATTGCTTCAGCTCTTCATGCCGCTGTTAATTTTGGACAGTATCCTTATGGAGGTTATATCGTGAACCGTCCTACACAAAGCCGAAGATGGATCCCAGAAGAAAAAACTCCAGAATATGATGAGATGAGCAAGAATCCTCAAGAAGCTTATTTGAAAACAATTACTCCAAAGTACCAGGCCGTTGTTGATCTTTCAATATTGGAGCTACTATCAACCCATGCTTCAGACGAGGTGTATCTTGGACAAAGGAACAGTCTGAATTGGACTTCTAATGAAAAAGCAAAAGATTTGTTTAAAAGATTTGCAGATGACTTAGAAAAAATTGAGAAAAAAATCTCAGAAAGGAACAAGACTGAAGGACTTAAAAATCGTACTGGACCAGTCAAAATGCCCTACACTCTGCTTCTTCCTACCAGTAAACCAGGGATGACTTTTAGAGGAATCCCTAACAGTGTCTCTATCTAA 2466 0.4002 MSSIVEKKKLVKGRVVLIRKSVVQTLSTPKGILATGIKIINDSPQLDITKSVSFKLISSSKSENESNSAGKVGKDAYLENNVSVLRTLKETREEYDIYFEWDDEDMGTPGAFYVTNKMNEEFFLVSVTIEYPSEHDKNNIIHXDCNSWVHNDKRSETGRIFFANISYLPGETPVQLQAYRQKELENLRGNGTGKREKGDRIYDYDVYNDLGFLESDRQEHHPVLGGLKYPYPRRVRTGRPLIERNGEKYEVPDEVYYVPRDEDFSQQKTLEFLELSRKALGGKVKPLLLSLYLKTTSNEFNSFEEMLKMYEGGNPSVIDFPTPDVIKESKSAWMTDEEFAREMIAGVNPHVIRLLKKEDLAFPGNTSRSTVTKETLEINMNGVKVDEAFANNKLFILDYYDAFMPYLEKINELPSAKAYATRTFLFLKDDTLKPLAIELSKPHPNDETKVVLPADNGVDGIIWLLAKAHVVVNDTNYHQLISHWLHTHAVIEPFVISTHRNLSVLHPIYKLLHPHFRDTLNINSLARKTLISAGSIIEQTFLPGPYSMVMSSAIYKNWVFADQALPKDLIKRGLAVEDTTAPHGLKLAIEDYPYAVDGLEIWNATEKWVQEYVSLYYSEEGAVQRDTELQAWWKEAVEKGHGDLKADLWPKMHTSNDLVEICTTIIWIASALHAAVNFGQYPYGGYIVNRPTQSRRWIPEEKTPEYDEMSKNPQEAYLKTITPKYQAVVDLSILELLSTHASDEVYLGQRNSLNWTSNEKAKDLFKRFADDLEKIEKKISERNKTEGLKNRTGPVKMPYTLLLPTSKPGMTFRGIPNSVSI* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0287 821 Gene3D - 475 819 - -
Vra9g0287 821 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 166 821 IPR013819 GO:0016702|GO:0046872
Vra9g0287 821 Gene3D - 268 315 IPR027433 -
Vra9g0287 821 SMART LH2_4 9 164 IPR001024 GO:0005515
Vra9g0287 821 SUPERFAMILY Lipoxigenase 168 821 IPR036226 -
Vra9g0287 821 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 167 IPR036392 GO:0005515
Vra9g0287 821 Gene3D - 168 267 - -
Vra9g0287 821 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 316 821 - -
Vra9g0287 821 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 3 313 - -
Vra9g0287 821 ProSitePatterns Lipoxygenases iron-binding region signature 1. 478 492 IPR020833 GO:0016702|GO:0046872
Vra9g0287 821 Gene3D - 357 474 - -
Vra9g0287 821 PRINTS Plant lipoxygenase signature 133 151 IPR001246 GO:0016491
Vra9g0287 821 PRINTS Plant lipoxygenase signature 159 180 IPR001246 GO:0016491
Vra9g0287 821 PRINTS Plant lipoxygenase signature 198 214 IPR001246 GO:0016491
Vra9g0287 821 PRINTS Plant lipoxygenase signature 230 249 IPR001246 GO:0016491
Vra9g0287 821 PRINTS Plant lipoxygenase signature 297 318 IPR001246 GO:0016491
Vra9g0287 821 PRINTS Plant lipoxygenase signature 734 748 IPR001246 GO:0016491
Vra9g0287 821 ProSiteProfiles PLAT domain profile. 33 163 IPR001024 GO:0005515
Vra9g0287 821 PRINTS Lipoxygenase signature 460 477 IPR013819 GO:0016702|GO:0046872
Vra9g0287 821 PRINTS Lipoxygenase signature 478 495 IPR013819 GO:0016702|GO:0046872
Vra9g0287 821 PRINTS Lipoxygenase signature 498 518 IPR013819 GO:0016702|GO:0046872
Vra9g0287 821 Pfam Lipoxygenase 316 804 IPR013819 GO:0016702|GO:0046872
Vra9g0287 821 Pfam Lipoxygenase 176 313 IPR013819 GO:0016702|GO:0046872
Vra9g0287 821 Pfam PLAT/LH2 domain 66 162 IPR001024 GO:0005515
Vra9g0287 821 Coils Coil 758 778 - -
Vra9g0287 821 Gene3D - 316 349 IPR027433 -
Vra9g0287 821 ProSitePatterns Lipoxygenases iron-binding region signature 2. 505 515 IPR020834 GO:0016702|GO:0046872
Vra9g0287 821 Gene3D PLAT/LH2 domain 1 167 - -
Vra9g0287 821 PANTHER LIPOXYGENASE 3 313 IPR000907 GO:0016702|GO:0046872
Vra9g0287 821 PANTHER LIPOXYGENASE 316 821 IPR000907 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0287 Vra-Chr9 2173612 2177336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0287 9 821 Acyl Lipid Metabolism Gene Families AT1G55020 50.000 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0287 K15718 - gmx:100802685 1125.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0287 9 2173612 2177336 Vra5g2557 5 32363970 32367971 PCT