Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2513 ATGGCTGGGATTGTGGTGGTTTTTGACTTCGACTCAACAATCATCGAGTGCGATAGTGATAACTGGGTTCTTGATGAGTTTGGTCTAACTGAAAAGTTCTATGAGTTTCTTCCTAACACGCTTTGGAACCCTCTCATGGATAAGATGATGTACGAACTTCATTCACAAGGAAAAACCATTGAAGACATTGTACAAGTTCTGAATAGGACTCCAATGCATCCCCGCATTGTCCCAGCCATAGAAGCAGCACATTCCCTTGGGTGCGAGTTGAAGATTGTGAGCGATGCAAATAGTTTCTTTATTGAAACAATTTTGAAGCATCATGGGGTTTGGAATTGTTTCTCGGAGATCACTGCAAACCCCAGCTATGTTAATGAAGAAGGGATTCTCAGAATTTGCCCCTACCATGATTATGTCAAATCTTCTCATGGATGTAATATCTGTCCAGCAAACATGTGCAAGGGATTGGTGATGGAAAGGATCCAAAATTCGGTCGATGCTGCATCAGAGAAGAAGTACATTTATCTCGGAGATGGAACTGGAGACTTCTGCCCTAGTTTGAAGCTGAAAGATAAGGACTTTTTGATGCCCAGAAGGAATTTTCCATTGTGTGATTTAGTGTCCAAAAACTCTAATCACGTAAAAGCAGAGGTGCATGCATGGAGAAATGGGGAAGAGCTTCATGATGTTATGCTCCATATTATCAAGAACAGTGTTAGTAGTTGTACTCCAACAAGATCAATCGATTGCAAGTTAGGGTCAATTTCAATTGATGTTCATAACCCTTTACCCACAGCACTTCCAGTTCCTCAATAA 816 0.4105 MAGIVVVFDFDSTIIECDSDNWVLDEFGLTEKFYEFLPNTLWNPLMDKMMYELHSQGKTIEDIVQVLNRTPMHPRIVPAIEAAHSLGCELKIVSDANSFFIETILKHHGVWNCFSEITANPSYVNEEGILRICPYHDYVKSSHGCNICPANMCKGLVMERIQNSVDAASEKKYIYLGDGTGDFCPSLKLKDKDFLMPRRNFPLCDLVSKNSNHVKAEVHAWRNGEELHDVMLHIIKNSVSSCTPTRSIDCKLGSISIDVHNPLPTALPVPQ* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2513 271 PANTHER PHOSPHATASE, ORPHAN 1, 2 1 271 IPR016965 GO:0016791
Vra5g2513 271 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 5 187 - -
Vra5g2513 271 Pfam Putative Phosphatase 4 235 IPR016965 GO:0016791
Vra5g2513 271 Gene3D - 2 190 IPR023214 -
Vra5g2513 271 SUPERFAMILY HAD-like 5 186 IPR036412 -
Vra5g2513 271 PIRSF PLP_phosphatas_PHOSPHO2 1 239 IPR016965 GO:0016791
Vra5g2513 271 PANTHER 2,3-DIKETO-5-METHYLTHIO-1-PHOSPHOPENTANE PHOSPHATASE 1 271 - -
Vra5g2513 271 TIGRFAM DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4 198 IPR006384 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2513 Vra-Chr5 32056033 32057777 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2513 K13248 - gmx:100789743 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0229 9 1655147 1657460 Vra5g2513 5 32056033 32057777 ECH
Vra5g2513 5 32056033 32057777 Vra5g2513 5 32056033 32057777 ECH
Vra9g0230 9 1659028 1661186 Vra5g2513 5 32056033 32057777 PCT