Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2481 ATGTGTGTCTGTGTTAGTGTTGAATTGAGGTGCTATATAAACCCCTCCACACCATGCCATACCACACCACACTGCACCATTTCCTTTGCAATTTTAACTACAATACAAACTTCGTTTTTGTTTTTCCTCTCACATTTTCTGATTATGGACAAAATCCATTCCCACAGGCAGGTAGCTGTTATCAAACACTCCCTCTTCGATCAGGGATATTTGGATGAGCAGTTTATCCAACTGGAAGAATTGCAGGACGATGCTAATCCTAACTTTGTTGAGGAAATTGTTACTCTTTACTACCGTGATTCTTCTAGGCTTATCTCAAACTTGGACCACACACTGGAAAGGAACCCTCTGGATTTCAACAAGCTGGACACAATTATGCACCAGTTTAAAGGAAGCAGCTCAAGCATCGGAGCTAAAAAGGTGAAAGCAGAATGCACTCTTTTTAGGGAATATTGCAGGACAAGAAATGGAGAAGGATGCAGGAAGAGCTTCCAACAAATGAAGAAAGAATATGCAATACTGAGAAAGAAGCTTGAAACATATTTTCAGATGGCAAGGCAAGCTGGGCCCAAAGAGACAGCACTTCGGCCCAAGTAA 597 0.4154 MCVCVSVELRCYINPSTPCHTTPHCTISFAILTTIQTSFLFFLSHFLIMDKIHSHRQVAVIKHSLFDQGYLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLISNLDHTLERNPLDFNKLDTIMHQFKGSSSSIGAKKVKAECTLFREYCRTRNGEGCRKSFQQMKKEYAILRKKLETYFQMARQAGPKETALRPK* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2481 198 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 54 187 IPR036641 GO:0000160
Vra5g2481 198 PANTHER HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 4 53 194 - -
Vra5g2481 198 PANTHER - 53 194 IPR045871 GO:0000160|GO:0009927|GO:0043424
Vra5g2481 198 Pfam Hpt domain 92 174 IPR008207 GO:0000160
Vra5g2481 198 Gene3D HPT domain 46 194 IPR036641 GO:0000160
Vra5g2481 198 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 86 181 IPR008207 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2481 Vra-Chr5 31782312 31785137 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2481 K14490 - gmx:100800310 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0184 9 1290483 1292013 Vra5g2481 5 31782312 31785137 ECH
Vra5g2481 5 31782312 31785137 Vra5g2481 5 31782312 31785137 ECH
Vra5g2481 5 31782312 31785137 Vra5g1004 5 16465489 16467894 ECH
Vra5g2481 5 31782312 31785137 Vra9g0184 9 1290483 1292013 PCT