Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1004 ATGGACAAGACTAAGTTGAGAGAACAAGCCCTCTTCATACGAACTTCACTCTTTGATCAGGGATTCCTTGACGAGCAATTCATTGAGTTAGAAGAACTGCAAGACGATGCTAATCCCAATTTTGTTGAAGAAATTGTGACCCTTTTCTACAGTGACTCTGTAAGACTGATCTACAACATAGAAAGAGGACTGATGACTAACCCTCCAAATTTCACCAAGCTAGATGATTTCATGCATCAATTCAAGGGTAGTTGCTCAAGCATTGGAGCAAAGAAGGTGAAGACTGAATGTAGCAGATTCAGTGAATACTGCGAAGCAGAAAACTTTGAGGGGTAA 336 0.4048 MDKTKLREQALFIRTSLFDQGFLDEQFIELEELQDDANPNFVEEIVTLFYSDSVRLIYNIERGLMTNPPNFTKLDDFMHQFKGSCSSIGAKKVKTECSRFSEYCEAENFEG* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1004 111 Gene3D HPT domain 1 111 IPR036641 GO:0000160
Vra5g1004 111 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 111 IPR008207 GO:0000160
Vra5g1004 111 PANTHER PSEUDO HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 2-LIKE 3 111 - -
Vra5g1004 111 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 12 111 IPR036641 GO:0000160
Vra5g1004 111 CDD HPT 42 106 IPR008207 GO:0000160
Vra5g1004 111 PANTHER - 3 111 IPR045871 GO:0000160|GO:0009927|GO:0043424
Vra5g1004 111 Pfam Hpt domain 44 105 IPR008207 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1004 Vra-Chr5 16465489 16467894 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1004 K14490 - gmx:100780856 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1004 5 16465489 16467894 Vra5g1004 5 16465489 16467894 ECH
Vra9g0184 9 1290483 1292013 Vra5g1004 5 16465489 16467894 ECH
Vra5g2481 5 31782312 31785137 Vra5g1004 5 16465489 16467894 ECH