Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0248 ATGATTTGGGAATTAATTTCTGTCCAAACAATGGCAACGGATTCTTCCAATGGTAATGGACATCACCAGACGACAACAACAAAGACACCTCCTTCACCATCTCCCCTGCGCTTTTCCAAATTTTTTCAGTCCAACATGAGGATCTTGGTCACTGGAGGAGCTGGATTCATTGGATCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGACAACCTCAAAAAATGGATTGGCCATCCAAGATTTGAGCTTATCCGTCATGATGTCACGGAGCCTTTGCTGATAGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATATTCTACAAATACAATCCAGTGAAGACTATAAAGACTAATGTCATAGGCACTCTCAATATGCTTGGGCTTGCAAAGAGAGTAGGAGCAAGGATTTTGCTTACATCAACTTCTGAGGTATATGGAGATCCTCTTGTGCACCCTCAACCTGAAAGCTATTGGGGCAATGTTAACCCTATTGGAGTCCGTAGTTGTTATGATGAGGGGAAACGGGTGGCTGAAACTTTGATGTTTGATTACCATAGGCAGCATGGGATTGAAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGACGATGGGCGTGTTGTTAGCAATTTCATTGCTCAAGCACTTCGGGGGGAGTCCTTGACAGTCCAAAGTCCAGGAACTCAAACTCGAAGTTTCTGTTATGTCTCTGACCTGGTTGATGGTCTTATTCGCCTCATGGAAGGGCCAAACACCGGGCCAATTAACCTTGGAAACCCCGGTGAATTTACAATGATTGAACTTGCTGAGACTGTGAAAGAGCTTATCAATCCTGATGTTGAGATCAAGATGGTGGAGAACACTCCTGATGATCCGAAACAAAGAAAACCAGACATAACAAAAGCAAAAGAATTGTTGGGATGGGAGCCAAAGGTGAAGTTGAGGGATGGTCTTCCTCTTATGGAAGAAAATTTCCGTCTGAGGCTTGGAGTTGACAAGAAGAAGTAG 1080 0.4324 MIWELISVQTMATDSSNGNGHHQTTTTKTPPSPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGESLTVQSPGTQTRSFCYVSDLVDGLIRLMEGPNTGPINLGNPGEFTMIELAETVKELINPDVEIKMVENTPDDPKQRKPDITKAKELLGWEPKVKLRDGLPLMEENFRLRLGVDKKK* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0248 359 CDD UGD_SDR_e 46 350 - -
Vra4g0248 359 Pfam GDP-mannose 4,6 dehydratase 49 343 IPR016040 -
Vra4g0248 359 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 11 358 IPR044516 GO:0042732|GO:0048040|GO:0070403
Vra4g0248 359 Gene3D - 45 353 - -
Vra4g0248 359 MobiDBLite consensus disorder prediction 13 35 - -
Vra4g0248 359 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 11 358 - -
Vra4g0248 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 350 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0248 Vra-Chr4 5161746 5166573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0248 43 358 Miscellaneous Gene Families AT1G02000 23.851 1.61e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0248 K08678 - gmx:100790835 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0248 4 5161746 5166573 Vra2g0621 2 4896337 4901024 PCT
Vra2g0620 2 4889672 4894507 Vra4g0248 4 5161746 5166573 PCT