Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0620 ATGGCAACGAATTCTTCCAATGGAGCAACAAAGCAACCCCCAATGCCGTCCCCCTTGCGTTTTTCAAAGTTTTTTCAGTCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTTGTTGTTGCTGACAATTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTTGAGTTAATCCGCCATGATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGTCCCGCTTCTCCAATTTTCTACAAATACAATCCTGTAAAGACAATAAAAACAAATGTGATTGGAACACTGAACATGCTTGGGCTCGCTAAACGTGTGGGAGCAAGGATTTTGCTTACATCTACCTCAGAAGTATATGGAGATCCTCTCGTGCATCCACAACCAGAAAGCTATTGGGGAAATGTTAACCCTATTGGAGTTCGAAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGAAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTGGTCAGCAACTTCATTGCTCAAGCACTTCGTGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATGGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGGCGAATTTACAATGATTGAACTTGCCGAGAATGTCAAAGAGCTTATTAATCCAGCAGTGGAGATAAAGATGGTTGAGAACACTCCTGACGATCCTCGTCAGAGAAAACCAGACATAACAAATGCAAAGGAATTGCTGGGATGGGAACCAAAGGTAAAGTTGCGAGATGGCCTTCCTCTTATGGAAGAGGATTTCCGTCTGAGGCTTGGGGTTCCCAAGAAAAACTAA 1029 0.4208 MATNSSNGATKQPPMPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVVVADNFFTGSKDNLKKWIGHPRFELIRHDVTEQLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQVPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINPAVEIKMVENTPDDPRQRKPDITNAKELLGWEPKVKLRDGLPLMEEDFRLRLGVPKKN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0620 342 CDD UGD_SDR_e 29 333 - -
Vra2g0620 342 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 342 IPR044516 GO:0042732|GO:0048040|GO:0070403
Vra2g0620 342 Gene3D - 28 335 - -
Vra2g0620 342 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 1 342 - -
Vra2g0620 342 Pfam GDP-mannose 4,6 dehydratase 32 326 IPR016040 -
Vra2g0620 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 333 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0620 Vra-Chr2 4889672 4894507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0620 31 325 Miscellaneous Gene Families AT4G00110 24.242 5.27e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0620 K08678 - gmx:100819843 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0620 2 4889672 4894507 Vra2g0620 2 4889672 4894507 ECH
Vra2g0620 2 4889672 4894507 Vra4g0248 4 5161746 5166573 PCT