Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0621 ATGGCATCGAATTCTTCTGATGGAGATTCTAGTAAATCACCGAAGCAGCCACCCCTGCCATCTCCCTTGCGTTTCTCCAAATTCTATCAGTCTAACATGAGAATCTTGATCACTGGAGGAGCTGGATTCATTGGTTCTCACCTAGTCGATAGATTGATGGAAATAGAAAAAAATGAGGTCATTGTTGTCGATAACTACTTCACCGGATCAAAGGATAATCTCAAAAAATGGATGGGTCATCCCAGATTTGAGCTTATCCGTCATGATATCACTGAACCTTTGATAATTGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCATCTCCTATTTTCTACAAATATAATCCGGTGAAGACAATAAAGACAAATGTGATTGGCACGCTGAACATGCTTGGGCTTGCAAAGCGAGTTGGAGCAAGGATTCTACTTACCTCAACATCGGAGGTATATGGGGATCCTCTTGAGCATCCCCAAAATGAAAGCTATTGGGGAAATGTGAACCCTATTGGAGTTCGTAGTTGTTATGATGAGGGAAAGCGTGTAGCTGAGACTTTGATGTTTGACTATCATAGGCAGCATGGCTTAGAAATACGTGTTGCAAGAATCTTTAACACGTATGGGCCGCGCATGAATATTGACGATGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCACTTCGAGGTGAACCCTTGACGGTCCAGTCTCCAGGGACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGGTCGATGGCCTTATCCGTCTCATGGAAGGATCCGACACGGGGCCAATCAACCTCGGAAATCCAGGTGAATTTACAGTTCTTGAACTTGCTGAGCAAGTTAAGGAGCTAGTTAATCCAGATGTAGAGATAAAGATGGTGGAAAATACTCCTGATGATCCCCGGCAGAGAAAACCAGACATAACAAAAGCAAAGGAGTTACTTAATTGGGAACCAAAGTTTCAGCTGCGAGATGGTCTGCCTCTCATGGAAGAAGATTTCCGTTTGAGGCTTGGAGTTGTCAAAAAATAA 1038 0.4364 MASNSSDGDSSKSPKQPPLPSPLRFSKFYQSNMRILITGGAGFIGSHLVDRLMEIEKNEVIVVDNYFTGSKDNLKKWMGHPRFELIRHDITEPLIIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQNESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRVARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQSPGTQTRSFCYVSDLVDGLIRLMEGSDTGPINLGNPGEFTVLELAEQVKELVNPDVEIKMVENTPDDPRQRKPDITKAKELLNWEPKFQLRDGLPLMEEDFRLRLGVVKK* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0621 345 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 345 IPR044516 GO:0042732|GO:0048040|GO:0070403
Vra2g0621 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 337 IPR036291 -
Vra2g0621 345 Pfam GDP-mannose 4,6 dehydratase 36 330 IPR016040 -
Vra2g0621 345 Gene3D - 30 154 - -
Vra2g0621 345 Gene3D - 155 340 - -
Vra2g0621 345 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 1 345 - -
Vra2g0621 345 MobiDBLite consensus disorder prediction 1 22 - -
Vra2g0621 345 CDD UGD_SDR_e 33 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0621 Vra-Chr2 4896337 4901024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0621 30 345 Miscellaneous Gene Families AT1G02000 23.932 4.94e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0621 K08678 - gmx:100818771 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0621 2 4896337 4901024 Vra2g0621 2 4896337 4901024 ECH
Vra4g0248 4 5161746 5166573 Vra2g0621 2 4896337 4901024 PCT