Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0185 ATGTCTCTGATGTCTGTTGGGAGGATGATGGCTTTTGTGTTTGCTTTTGTTGCAATTGTGCTGTGGGGTTGCGCTGAGTGTAAAGAGTGCACAAACAATAATGCTCAATCACATACTCACCGTTACCAGATATTGACATCATCGAATGAATCTTGGAACATAATCTCGCATTATAAATTGGCTCCAAAGGATGACCATGACCACGTTTTGGCTGATTTGCTGCCAAGGAAGTTGTTGAAAGAGGAACACCAACATGATTGGGATGTGATCATGAGAAAAACTGAGAAAGTGAGTGTCTTGAAGGCACCCCATCAACGCCAAGATTTTCTGAAAGAAGTGTCTCTGCATGATGTGAGATTGCACGAGGGTTCAATCCATGGTCGGGCACAACAGACAAACTTAGAGTATCTGTTGATGTTGGATGTGGACAGGTTACTCTGGAGCTTTAGGAAGACTGCTGGTCTTCCAACTCCTGGAACACCATATGGAGGATGGGAAGATCCAAAAATAGAGCTTCGAGGTCATTTTGTTGGGCACTACTTGAGTGCATCAGCTTTAATGTGGGCCAGCACACATAATGATATCTTGAAGAAGCAAATGACAGCCGTTGTTGCCAATCTCTCAATCTGTCAAGAGAAAATTGGTACAGGGTATCTCTCTGCATTTCCATCTGAATTTTTTGACCGATTTGAAGCTACTGAGCATGTTTGGGCTCCATATTACACCATTCACAAGATATTGGCTGGCCTTCTGGATCAACATTCTATAGCTAAAAATCCTCAAGCTCTAAATATGGTGAAATGGATGGTAGATTACTTTTTCAACAGAGTGCAGAATGTTATAACAAAATTTAGTATAAGTAGACACTATCAATCACTGAATGAGGAAACTGGAGGCATGAATGATGTCCTTTACAAACTATACAGCATAACAGGAGATCAAAGGCATCTGCTATTAGCTCACCTTTTTGACAAGCCATGCTTTTTAGGTTTGCTTGCAGTGAAGGCTAATGATATAGCTAATTTTCATGCTAACACGCATATCCCAGTGGTTGTTGGATCTCAAATGCGGTATGAAGTCACTGGTGATCCACTCTATAAGGAAATAGGAACATTCTTTATGGATATTGTTAACTCTTCTCATACTTATGCAACTGGAGGGACATCAGTCGATGAATTCTGGAGTGATCCAAAGAGAATTGGAGACACCCTAGAATCAACTGACAATGAGGAATCATGCACAACTTACAATATGTTGAAGGTTTCACGACACCTGTTCAGATGGACCAAAAAGGTATCATATGCAGATTATTATGAGCGTGCCTTAACAAATGGTGTATTAAGCATTCAAAGAGGAACAGAACCTGGAGTGATGATATACATGCTTCCTCAAGGTCGCGGGGTTTCCAAGGCTAAAGCTAGCCTTGGTTGGGGAACGAAGTTTGACAGTTTCTGGTGCTGCTATGGAACAGGAATTGAATCATTCTCAAAGCTGGGAGATTCCATCTATTTTGAAGAGGGAGGGAAAAATCCTACTCTTTACATTATCCAGTACATATCAAGCTTCTTCAATTGGAAGTCTGGGCAAATTATTGTTAATCAGACAGTTGTTCCTGCTGTTTCATGGGATCCTTTCCTACGAGTGACATTTACATTTTCTCTAGCTAAGAAAACTGGTGCTTTGTCTACACTTAACTTCAGACTACCAACTTGGACACATAAGGATGGTGCAAAGGGTGTTTTGAATAATGAGTCTTTGTCTCTGCCAACCCCAGGCAAATTTTTGTCCATCACCAGAAAATGGAATGCTGGTGACAAGCTAAGCCTTCAATTTCCCATTACCCTAAGAACCGAGGCCATAAAAGATGACAGGTCTCAATATGCCTCGATTCAAGCAATTCTATATGGTCCTTATCTTCTTGCTGGTCACACCACTGGTGATTGGGACATCAAAGCTGCACCAAATGCATCTATAGAAGACTGGATCACTCCAATTCCAGCCAGCTACAACAGTCAGTTATTCTATTTTTCCCAAGCCTTTGCCAACTCAACTTATGTTTTCACAAACTCCAAGCATCCTTTAGCAATGCAAAAATTACCTGTGCCTGGAACTGATTTGGCTCTTCATGCAACTTTTAGAGTTATCCAAGGAAAATCTTCCACAAATTGCACCACATTGACAGATGCTATTGGTAAAACAATAATGCTAGAACCTTTTGATCATCCAGGAATGCGAGTGATTCACCAAGGAAGGGAACATCCTCTTACAGTAGTAGGCTCTTCCTCTGGTGGCCCCTCTTGTGCTTTTGTTGTGGTTCCAGGATTGGATGGACGAAAGGAAACCATATCTTTGGAATCCAAAAGCCATAATGGTTGCTTTGTGCATAGTGGTTTGCATTCTGGTAGAGGAGTGAAACTCAGTTGCAATTCTTCTTCTGATGCTACATTTAAAGAATCAGCAAGTTTTATTGCCAAAAGAGGAATAAGCAAATATGATCCTATCAGCTTTGTGGCCAAAGGAGTAAACAAGAATTTTCTTCTGGAGCCGTTATTGGCCTTCAGAGATGAATCTTATACGGCTTATTTCAACATTAAAGGTTGA 2601 0.4095 MSLMSVGRMMAFVFAFVAIVLWGCAECKECTNNNAQSHTHRYQILTSSNESWNIISHYKLAPKDDHDHVLADLLPRKLLKEEHQHDWDVIMRKTEKVSVLKAPHQRQDFLKEVSLHDVRLHEGSIHGRAQQTNLEYLLMLDVDRLLWSFRKTAGLPTPGTPYGGWEDPKIELRGHFVGHYLSASALMWASTHNDILKKQMTAVVANLSICQEKIGTGYLSAFPSEFFDRFEATEHVWAPYYTIHKILAGLLDQHSIAKNPQALNMVKWMVDYFFNRVQNVITKFSISRHYQSLNEETGGMNDVLYKLYSITGDQRHLLLAHLFDKPCFLGLLAVKANDIANFHANTHIPVVVGSQMRYEVTGDPLYKEIGTFFMDIVNSSHTYATGGTSVDEFWSDPKRIGDTLESTDNEESCTTYNMLKVSRHLFRWTKKVSYADYYERALTNGVLSIQRGTEPGVMIYMLPQGRGVSKAKASLGWGTKFDSFWCCYGTGIESFSKLGDSIYFEEGGKNPTLYIIQYISSFFNWKSGQIIVNQTVVPAVSWDPFLRVTFTFSLAKKTGALSTLNFRLPTWTHKDGAKGVLNNESLSLPTPGKFLSITRKWNAGDKLSLQFPITLRTEAIKDDRSQYASIQAILYGPYLLAGHTTGDWDIKAAPNASIEDWITPIPASYNSQLFYFSQAFANSTYVFTNSKHPLAMQKLPVPGTDLALHATFRVIQGKSSTNCTTLTDAIGKTIMLEPFDHPGMRVIHQGREHPLTVVGSSSGGPSCAFVVVPGLDGRKETISLESKSHNGCFVHSGLHSGRGVKLSCNSSSDATFKESASFIAKRGISKYDPISFVAKGVNKNFLLEPLLAFRDESYTAYFNIKG* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0185 866 SUPERFAMILY Six-hairpin glycosidases 174 467 IPR008928 GO:0005975
Vra4g0185 866 SUPERFAMILY AbfB domain 736 847 IPR036195 GO:0046373|GO:0046556
Vra4g0185 866 Pfam Beta-L-arabinofuranosidase, GH127 117 641 IPR012878 -
Vra4g0185 866 PANTHER - 18 865 - -
Vra4g0185 866 Gene3D - 727 850 - -
Vra4g0185 866 PANTHER PROLINE-TRNA LIGASE (DUF1680) 18 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0185 Vra-Chr4 4629312 4635548 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0185 K09955 - gmx:100791803 1295.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0185 4 4629312 4635548 Vra4g0185 4 4629312 4635548 ECH
Vra4g0185 4 4629312 4635548 Vra2g0528 2 4140770 4147479 PCT
Vra2g0527 2 4130828 4135519 Vra4g0185 4 4629312 4635548 PCT