Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0528 ATGTGTTTTGTGGGGAGGATGAAGGGTTTCTTGTTTCTGTTTGCGGCTCTTACTTTGTTTGGTGGCTATACTGTTTCTAAAGAATGTACAAACATTCCGACTCAATCTCATTCATTCAGATACGAGTTACTGACATCCAAGAATGTAACCTGGCGAGAGGAGGTGATGTCCCACTACCATTTAACTCCAACGGACGAAACTGCTTGGGCTGATTTGCTTCCGAGGAAGTTCTTGACAGAACAGAACCAACATGATTGGGAGATGATGTATAAGAAAATTAAGAACATGGGTGTGTCGAAGTCCCCAGAAGGATTTCTTAAAGAAGTGGCTCTTGAGGATGTGAAGTTGGATAAGGATTCAATCCATGGCAGAGCACAGCAGACAAACTTGGAGTATCTCTTGATGTTAGATGTTGACAGATTGATCTGGAGTTTTAGGAAGACAGCTGGTCTATCTACTCCTGGCACCCCTTATGGAGGCTGGGAAGGTCCTGAAGTTGAGCTTCGCGGTCATTTTGTTGGGCATTACTTGAGTGCATCAGCTCTGATGTGGGCCAGCACACAGGATGATAGCCTGAAGCAGAAAATGTCATCTGTTGTTGCTGGCCTGTCTACTTGTCAGGAGAAAATAGGGACTGGATATTTATCTGCATTTCCATCTGAGTTGTTTGATCGATTTGAATCTGTTCAACCTGTTTGGGCTCCCTATTATACCATTCACAAGATTTTGGCTGGCCTCTTGGATCAACACACATTTGCTAGAAACCCTCAAGCTCTAAAAATGGTGACATGGATGGTTGACTACTTTTACAAAAGGGTACAGAATGTAATAACTAAGTCCACTATCAATAGGCACTATCAATCGCTGAACGAGGAAACAGGAGGAATGAATGATGTACTTTACAGATTATACAGCATAACAGGAGATTCTAAACATCTATTGTTGGCTCACCTTTTTGACAAGCCGTGCTTTTTAGGGTTGCTTGCAGTGCAGGCTAATGACATAGCTGATTTTCATGCTAATACACATATCCCAGTTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATAAGGAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTATGCAACTGGAGGGACATCAGTCAGCGAGTTTTGGAGTAACCCAAAGAGAATAGCGGACAACTTAAGAACAACAGAGAATGAAGAGTCATGCACGACTTATAACATGTTGAAGGTTTCACGCCACCTCTTTAAATGGACCAAAGAAGTCTCTTATGCAGACTATTATGAGCGTGCCTTAACAAATGGAGTGCTCAGCATTCAAAGAGGGACAGATCCTGGAGTGATGATTTACATGCTTCCACTTGGTATTGGAGTTTCCAAGGCTAAAACTGGACACAGTTGGGGAACACCGTTTGACTCTTTCTGGTGCTGCTACGGAACTGGAATTGAATCATTCTCAAAGCTGGGGGATTCTATCTATTTTGAAGAGGAAGGGAAAGGTCCTTCACTTTACATCATTCAGTACATATCAAGCTCATTTAATTGGAAATCTGGCAAAATCTTCCTCAATCAGACAGCTCTTCCAGCTTCTTCATGGGATCCTTACCTACGAGTGACATTTGCGTTATCTCCTGTTGAGAGTGCTTCGTCTACACTGCACTTTCGACTACCAAGTTGGACTACCCCAGATGGTGCCAAGGGCGTATTAAATGGTGAATCTTTGTCGCTGCCAGCTCCAGGATCTTTTTTGTCAATCACAAGACAGTGGAGTGCTAGTGATAAGCTCACCCTTCAGCTGCCCCTTACAGTAAGAACAGAGGCCATAAAAGATGACAGGCCTCAATATGCTTCTGTTAAAGCTATTCTTTATGGCCCTTATCTTCTTGCCGGTCATATAAGTGGTGGTGATTGGGACGACCTTAAAATTGAAGCTAACGATGCAGACTGGATCCTTCCTATTCCTGCCAGTTACAATAGCCAACTAGTTTCTTTTTTCCAAGATTTTGAAAAATCGACTTTTGTGTTGGCAAATTCAAACCAATCATTTGCAATGCAAAAGTTGCCTGAATCTGGCACTGATTTGGCTCTTAAGGCAACCTTTAGGCTTGTCCTGAAAGAGTCTTCCTCAAAGTTTTCAACATTAGCAGATGCTAATGATAGATCAGTGATGTTAGAACCATTTGATCTTCCTGGAATGAATGTGGTTCACCAAGGAGCAGATAAACCTCTTGTGATTGAAGATTCTTCCAAGGGCAAGCCATCTTCTGTTTTTGTTGTGGTACCAGGATTGGATGGAAGAAATGAAACCATATCTTTTGAATCACAGAGTGACAAGGGCTGCTACGTGTATAGTGGTTTGAGCTCTAGTGCAGGAGTCAAGCTCAGTTGCAAATCTGATTCTGATTCTTCATTTAACCAAGCAACAAGCTTTGTTGCTAGGAAAGGATTGAGCCAATACCATCCTATCAGTTTTGTGGCTAAAGGGGTTAGCAGGAAATTTCTTTTGCAGCCATTACTCTCCTTCAGAGATGAGCGTTATACAGTATATTTCAACATTCAAGATTGA 2583 0.422 MCFVGRMKGFLFLFAALTLFGGYTVSKECTNIPTQSHSFRYELLTSKNVTWREEVMSHYHLTPTDETAWADLLPRKFLTEQNQHDWEMMYKKIKNMGVSKSPEGFLKEVALEDVKLDKDSIHGRAQQTNLEYLLMLDVDRLIWSFRKTAGLSTPGTPYGGWEGPEVELRGHFVGHYLSASALMWASTQDDSLKQKMSSVVAGLSTCQEKIGTGYLSAFPSELFDRFESVQPVWAPYYTIHKILAGLLDQHTFARNPQALKMVTWMVDYFYKRVQNVITKSTINRHYQSLNEETGGMNDVLYRLYSITGDSKHLLLAHLFDKPCFLGLLAVQANDIADFHANTHIPVVVGSQMRYEITGDPLYKEIGTFFMDLVNSSHSYATGGTSVSEFWSNPKRIADNLRTTENEESCTTYNMLKVSRHLFKWTKEVSYADYYERALTNGVLSIQRGTDPGVMIYMLPLGIGVSKAKTGHSWGTPFDSFWCCYGTGIESFSKLGDSIYFEEEGKGPSLYIIQYISSSFNWKSGKIFLNQTALPASSWDPYLRVTFALSPVESASSTLHFRLPSWTTPDGAKGVLNGESLSLPAPGSFLSITRQWSASDKLTLQLPLTVRTEAIKDDRPQYASVKAILYGPYLLAGHISGGDWDDLKIEANDADWILPIPASYNSQLVSFFQDFEKSTFVLANSNQSFAMQKLPESGTDLALKATFRLVLKESSSKFSTLADANDRSVMLEPFDLPGMNVVHQGADKPLVIEDSSKGKPSSVFVVVPGLDGRNETISFESQSDKGCYVYSGLSSSAGVKLSCKSDSDSSFNQATSFVARKGLSQYHPISFVAKGVSRKFLLQPLLSFRDERYTVYFNIQD* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0528 860 SUPERFAMILY Six-hairpin glycosidases 152 455 IPR008928 GO:0005975
Vra2g0528 860 SUPERFAMILY AbfB domain 755 840 IPR036195 GO:0046373|GO:0046556
Vra2g0528 860 PANTHER PROLINE-TRNA LIGASE (DUF1680) 15 859 - -
Vra2g0528 860 Gene3D - 718 848 - -
Vra2g0528 860 PANTHER - 15 859 - -
Vra2g0528 860 Pfam Beta-L-arabinofuranosidase, GH127 113 635 IPR012878 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0528 Vra-Chr2 4140770 4147479 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0528 K09955 - gmx:100781521 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0528 2 4140770 4147479 Vra2g0528 2 4140770 4147479 ECH
Vra4g0185 4 4629312 4635548 Vra2g0528 2 4140770 4147479 PCT