Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0527 ATGCTTATGCTATTAACTATTTCATCTCATTTGGAAAACCAAATTCCAAGGAAGATGAAGGCTTTTGTGTCTGTGTTTGTCGTGCTGGTGTTGTGGAGTTGTGCTGCTGCTATTAAAGAATGTACAAACATTCCTACGCAATCACATACCTTCACGCATCAGCTATTGTCGTCCAAGAATGAAACGTGGAAGGATGAGGTGATGTCTCACTACCATTTGACGCCAACGGATGAATCTGCGTGGGCTGATATGCTGCCGAGGAAGTTATTGTCGGAACGACAACAACATGATTGGGCGGTTATGTATAAGAATATTAAGAACATGGGTGTGTTCAAGTCACCCGAAGGTTTTCTGAAAGAAGTGCCTCTTGAGGATGTGAGGTTGCATCAGAATTCCATCCATGGCACAGCACAGCGAACAAACTTGGAGTATCTGTTGATGCTTGATGTCGACAGGTTGCTTTGGAGCTTCAGGAAGACAGCTGGTTTACCCACGCCTGGTACTCCCTATGGAGGCTGGGAAGATCCCAAAGAAGAACTCAGGGGTCATTTTGTTGGGCATTACTTGAGCGCATCATCTCTAATGTGGGCCAGCACACAGAACGATGAGCTGAAACAGAAAATGACATCTCTTGTTGACGGTCTGTCTGCCTGTCAGGAGAAAATTGGAACGGGATATCTATCTGCATTTCCATCTGAGTTTTTTGATAGATTTGAAGCTATTCGACAAGTTTGGGCTCCGTATTATACCATTCACAAGATTATGGCCGGTCTCTTGGATCAATATACATTTGCTGGAAACTCTCAAGCTCTAAAAATGGTAATTCGGATGGTTGACTACTTCTACAATAGAGTGCAGAATGTAATAACAAAGTACACTATCAATAGACACTATCAATCACTGAACCAGGAAACTGGAGGAATGAATGATGTACTTTACAGATTATACAGCATAACAGGAGATTCTAAGCATATATTTTTGGCTCAACTCTTTGACAAGCCGTGCTTTTTAGGGTTGCTTGCTGTGCAGGCTAATGACATAGCTGACTTGCATGCTAATACGCATATCCCAATTGTTGTTGGATCTCAAATGCGATATGAAATCACAGGCGATCCACTTCATAAGGAAATTGCGACATTCTTCATGGAAACCATAAACTCTTCTCACAGCTATGCAACTGGAGGGACATCTGTCGGCGAATTCTGGAGAAATCCTAAGAGAATAGCAGACAACTTAAAAACAACAGAGAATGAAGAATCCTGCACAACTTATAATATGTTAAAGGTTTCACGCCACCTGTTTAGATGGACCAAAGAAGTATCTTATGCAGACTATTATGAGCGTGCATTAACCAATGGAGTGCTCAGCATTCAAAGAGGAACAGATCCTGGAGTGATGATTTACATGCTTCCACTTGGTCCTGGGGTTTCCAAGGCTCATACTTTCCATAGTTGGGGAACACCGTTTGACTCTTTCTGGTGCTGCTATGGAACGGCAATTGAATCATTCTCAAAGTTGGGAGATTCTATATATTTCGAGGAAGAAGGGGGAAATTCTACACTTTACATCATTCAGTACATATCGAGCTCATTTAACTGGAAATCTGGAAAAATTTTGCTCAATCAGACAGTTGCTCCAGCTGCTTCATGGGATCCTTACTTACGAGTGACATTTACGTTTTCTCCATCTGAGAAAACTTGGACTACATTGAAATTTCGAGTGCCTACTTGGACTAGTCTAGATGGTGCCAAGGGGATATTAAATGGTGAAACTTTATCTCTTCCAACTCCAGGAAATTTTCTGTCAATCACAAGACAGTGGAATGCTAATGACAACCTGACCCTTCTGTTGCCCCAAACCCTAAGAACAGAGGCCATAAAAGATGACAGACCTGAATTTGCATCTACTCAAGCAATTCTTTATGGTCCTTATCTTCTTGCCGGTCATAGCCTCAGTGGTGATTGGCACCTCAAATCTGGGGCTAATAATTCAGACTGGATTACCCCTGTTCCTGCCAGTTACAATAGTGAACTAGTTTCTTTTTCCCAATACTTCAAAAATTCAACTTTTGTTTTGGCAAATTCAAACCAATCTCTGGGTATGCAGAAGTTTCCTAAATCTGGAACTGATATGGCTGTTCAGGCAACTTTTAGGCTTGTCCCAAAAGAATCTTCCTCAAAGTTTTCAACATTAGCAGATGCTAATGATAGATCAGTGATGTTAGAACCATTTGATCTTCCTGGAATGAACGTGGTTCACCAAGGAGCAGATAAACCTCTTGTGATTGAAGATTCTTCCAAGGGCACGGCATCTTCTGTTTTTGTTGTGGTACCAGGATTGGATGGAAGAAATGGAAGCATATCTTTAGAATCACAGAGTGACAAGGGCTGCTATGTGTATAGTGATTTGAACTCTAACGCAGGAGTCAAGCTAAGTTGCAAATCTGATTCTGATGCTAAGTTCAACGAAGCAACAAGCTTTGTTTCTCAAAAGGGATTCAGCCAATACAATCCTATCAGTTTTGTGGCTAAAGGCGTAAACAGGAACTTTCTTTTGGAGCCGATACTCTCATTCAGAGATGAGTATTACACAGTTTATTTCAACATTGGAGGTTGA 2616 0.414 MLMLLTISSHLENQIPRKMKAFVSVFVVLVLWSCAAAIKECTNIPTQSHTFTHQLLSSKNETWKDEVMSHYHLTPTDESAWADMLPRKLLSERQQHDWAVMYKNIKNMGVFKSPEGFLKEVPLEDVRLHQNSIHGTAQRTNLEYLLMLDVDRLLWSFRKTAGLPTPGTPYGGWEDPKEELRGHFVGHYLSASSLMWASTQNDELKQKMTSLVDGLSACQEKIGTGYLSAFPSEFFDRFEAIRQVWAPYYTIHKIMAGLLDQYTFAGNSQALKMVIRMVDYFYNRVQNVITKYTINRHYQSLNQETGGMNDVLYRLYSITGDSKHIFLAQLFDKPCFLGLLAVQANDIADLHANTHIPIVVGSQMRYEITGDPLHKEIATFFMETINSSHSYATGGTSVGEFWRNPKRIADNLKTTENEESCTTYNMLKVSRHLFRWTKEVSYADYYERALTNGVLSIQRGTDPGVMIYMLPLGPGVSKAHTFHSWGTPFDSFWCCYGTAIESFSKLGDSIYFEEEGGNSTLYIIQYISSSFNWKSGKILLNQTVAPAASWDPYLRVTFTFSPSEKTWTTLKFRVPTWTSLDGAKGILNGETLSLPTPGNFLSITRQWNANDNLTLLLPQTLRTEAIKDDRPEFASTQAILYGPYLLAGHSLSGDWHLKSGANNSDWITPVPASYNSELVSFSQYFKNSTFVLANSNQSLGMQKFPKSGTDMAVQATFRLVPKESSSKFSTLADANDRSVMLEPFDLPGMNVVHQGADKPLVIEDSSKGTASSVFVVVPGLDGRNGSISLESQSDKGCYVYSDLNSNAGVKLSCKSDSDAKFNEATSFVSQKGFSQYNPISFVAKGVNRNFLLEPILSFRDEYYTVYFNIGG* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0527 871 PANTHER PROLINE-TRNA LIGASE (DUF1680) 24 869 - -
Vra2g0527 871 PANTHER - 24 869 - -
Vra2g0527 871 Pfam Beta-L-arabinofuranosidase, GH127 125 647 IPR012878 -
Vra2g0527 871 Gene3D - 732 854 - -
Vra2g0527 871 SUPERFAMILY AbfB domain 764 851 IPR036195 GO:0046373|GO:0046556
Vra2g0527 871 SUPERFAMILY Six-hairpin glycosidases 180 482 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0527 Vra-Chr2 4130828 4135519 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0527 K09955 - gmx:100783150 1437.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0527 2 4130828 4135519 Vra4g0185 4 4629312 4635548 PCT