Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1188 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACATAAATTTCAAGAAGAGAGATTCATGCCAAACTTGTGGATACCCTAAATTTGGAGGTCCCGACCCAACAACTTACAGATATAACTGGACTGAAGCCTTGGCAGGGGACTGGTATTGCACTTCTATGAACTGTGGAGCTCATAACTATGCCAGTAGATCAAGCTGCTATAGATGTGGTGCATTGAAGGATGGTTATTCTTGCAGATTTGGGGGAAACATGGATCCCTGTGGAGGATATGCTTCTGATTGTCCTCCTGGGTGGAAAACTGGTGACTGGATTTGCAGTAGAATTGGGTGTGGAGTTCATAACTATGCGAGCAGAAGAGAATGTTTCAAGTGCAAAACAGCCAGAAATTTTGGTGACGCCGACTGA 417 0.4556 MSWSGGDWMCGACQHINFKKRDSCQTCGYPKFGGPDPTTYRYNWTEALAGDWYCTSMNCGAHNYASRSSCYRCGALKDGYSCRFGGNMDPCGGYASDCPPGWKTGDWICSRIGCGVHNYASRRECFKCKTARNFGDAD* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1188 138 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 135 - -
Vra3g1188 138 SMART zf_4 6 30 IPR001876 -
Vra3g1188 138 SMART zf_4 105 131 IPR001876 -
Vra3g1188 138 SMART zf_4 50 76 IPR001876 -
Vra3g1188 138 PANTHER ZINC FINGER PROTEIN 1 135 - -
Vra3g1188 138 ProSitePatterns Zinc finger RanBP2-type signature. 107 128 IPR001876 -
Vra3g1188 138 Pfam Zn-finger in Ran binding protein and others 103 132 IPR001876 -
Vra3g1188 138 Pfam Zn-finger in Ran binding protein and others 49 77 IPR001876 -
Vra3g1188 138 SUPERFAMILY Ran binding protein zinc finger-like 49 79 IPR036443 -
Vra3g1188 138 ProSiteProfiles Zinc finger RanBP2 type profile. 103 134 IPR001876 -
Vra3g1188 138 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Vra3g1188 138 Gene3D - 44 79 - -
Vra3g1188 138 Gene3D - 1 35 - -
Vra3g1188 138 Gene3D - 98 134 - -
Vra3g1188 138 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Vra3g1188 138 SUPERFAMILY Ran binding protein zinc finger-like 98 134 IPR036443 -
Vra3g1188 138 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Vra3g1188 138 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Vra3g1188 138 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1188 Vra-Chr3 12604278 12605149 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1188 - - gmx:100792208 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2229 7 42307114 42309929 Vra3g1188 3 12604278 12605149 PCT
Vra3g1188 3 12604278 12605149 Vra7g2230 7 42315879 42318252 PCT