Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2229 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGTTTGCCAGCATATAAATTTCAAAAAGAGGGAAGCATGCCAGAGCTGTGGATACCCCAAGTATGGGGAACCTGACCCTTCAACCTACAGATACAACAGGACCGAAGCTTTGGCAGGGGACTGGTTCTGCAACTGTGGAGGTCACAACTATGCCAGTAGATCAAGGTGCTATAAATGTGGTGCAGTAAAAGATCATTACTTTTCAGTATATGGCACCAACTCTGGAGAATATGGATCTGACACTCTCCCCCCAGGATGGAAGACTGGAGACTGGCTTTGCCCAAGAATAGGGTGTGGAGGGCATAATTATGCTAGCAGAGAAGAATGCTTTAAATGCCAAATGCCTAGGGATTTTGGTGAGGGACTCTAA 402 0.4677 MSWSGGDWMCGVCQHINFKKREACQSCGYPKYGEPDPSTYRYNRTEALAGDWFCNCGGHNYASRSRCYKCGAVKDHYFSVYGTNSGEYGSDTLPPGWKTGDWLCPRIGCGGHNYASREECFKCQMPRDFGEGL* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2229 133 SUPERFAMILY Ran binding protein zinc finger-like 46 76 IPR036443 -
Vra7g2229 133 PANTHER ZINC FINGER PROTEIN 1 130 - -
Vra7g2229 133 ProSitePatterns Zinc finger RanBP2-type signature. 102 123 IPR001876 -
Vra7g2229 133 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Vra7g2229 133 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 130 - -
Vra7g2229 133 SUPERFAMILY Ran binding protein zinc finger-like 93 129 IPR036443 -
Vra7g2229 133 ProSiteProfiles Zinc finger RanBP2 type profile. 98 129 IPR001876 -
Vra7g2229 133 SMART zf_4 6 30 IPR001876 -
Vra7g2229 133 SMART zf_4 100 126 IPR001876 -
Vra7g2229 133 SMART zf_4 50 73 IPR001876 -
Vra7g2229 133 Gene3D - 42 76 - -
Vra7g2229 133 Gene3D - 95 129 - -
Vra7g2229 133 Gene3D - 1 35 - -
Vra7g2229 133 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Vra7g2229 133 Pfam Zn-finger in Ran binding protein and others 6 32 IPR001876 -
Vra7g2229 133 Pfam Zn-finger in Ran binding protein and others 98 127 IPR001876 -
Vra7g2229 133 Pfam Zn-finger in Ran binding protein and others 49 74 IPR001876 -
Vra7g2229 133 SUPERFAMILY Ran binding protein zinc finger-like 3 33 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2229 Vra-Chr7 42307114 42309929 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2229 - - pvu:PHAVU_003G162400g 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2229 7 42307114 42309929 Vra9g0107 9 665178 666803 ECH
Vra7g2229 7 42307114 42309929 Vra7g2229 7 42307114 42309929 ECH
Vra7g2229 7 42307114 42309929 Vra3g1188 3 12604278 12605149 PCT