Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0890 ATGAGTGAGGAATCTAGAAAGGAACGTCGGGTCTTGGTGGCCGTGGACGAAAGCGATGAGAGCATGTATGCTCTTTCTTGGAGCCTCAAGAACATAATTTTCCAGAATTCCAGTGATACCCTTATCCTTCTATACGTAAAGCCCCATCATCATGACACTTATACCCACTTGGATTCCACAAGCATAATGGATGATCCTGAAACACCAGGGCATGTGCTTTCTCCGAAAGCAAGCGCAGCAATAAAGAAGTATAGTCAAGATGTGGTCGATTGCGTGTTACAGAAATCGAAGAGAATGTGTAAAGATCTTGAAAACGTAAAGGTGGAGACACAGGTTGAGAGGGGAAACCCAAGGGACGTGATCTGTGAGATGTCTCGGAAGTTGAATGCTGACTTGCTAGTTTTGGGTAGCCACGACTATGGAGTTATGAAGAGGGCTTTCATTGAAAGTGTGAGCGAATACTGCTACCAGAACGTGAAGTGCCCAGTTCTGATTGTGAGGAAGCGAAAACCACATGCAGGTCCTGGGAACTAA 534 0.4551 MSEESRKERRVLVAVDESDESMYALSWSLKNIIFQNSSDTLILLYVKPHHHDTYTHLDSTSIMDDPETPGHVLSPKASAAIKKYSQDVVDCVLQKSKRMCKDLENVKVETQVERGNPRDVICEMSRKLNADLLVLGSHDYGVMKRAFIESVSEYCYQNVKCPVLIVRKRKPHAGPGN* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0890 177 Coils Coil 93 113 - -
Vra3g0890 177 CDD USP_Like 10 166 - -
Vra3g0890 177 PRINTS Universal stress protein signature 8 26 IPR006015 -
Vra3g0890 177 PRINTS Universal stress protein signature 127 139 IPR006015 -
Vra3g0890 177 PRINTS Universal stress protein signature 145 167 IPR006015 -
Vra3g0890 177 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 9 170 - -
Vra3g0890 177 Gene3D HUPs 4 175 IPR014729 -
Vra3g0890 177 PANTHER OS05G0357525 PROTEIN 4 171 - -
Vra3g0890 177 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 4 171 - -
Vra3g0890 177 Pfam Universal stress protein family 9 167 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0890 Vra-Chr3 8969768 8971142 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0890 - - ccaj:109797644 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0890 3 8969768 8971142 Vra3g0890 3 8969768 8971142 ECH
Vra8g1289 8 28791759 28792767 Vra3g0890 3 8969768 8971142 ECH
Vra3g0890 3 8969768 8971142 Vra8g1449 8 31434083 31435029 PCT