Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0641 ATGTCGCTAGCCACTAGAATGGACACCCAGAGGGAAACGAGTATTGTTTTTGAGACATTCACGTGGAAGATTCAAAATTTCTCAAAACAAAACACCAAGAAACTACAATCCAAGGCCTTCCGAATCCGAGGTTATAAATGGCGTATTCGTTTGTATCCATTAATGAGAAATGTCGACCATTTTTCGTTATATCTGATGGTTGCGGATTCTTTACCACCCTACGGATGGAACAGAAACACATATTTCAAGTTATCTCTGATTAATCAATTGGATGAGAATAAATCGGTTGTAAAGGAGACTCAGCAGAAGTTCAATGGCGGATATCGTAGTTGGGGCTCATTTTTTGTGAACCGAAGTGTCTTCTTTGACTCAAAGCAAGGGTATCTTGTGAACGACACATGCATCATTGAAGCTCATGTTTGTGTCTCCGATCTTAGTACAATTGAAGTTAACAAATTGAACACAATCTCTGCTAAGTTAGGTGATGAAGGAAGAAGAAATTCAGAATCCACAGAGCAGGAAGATGATAAAGAAACAGAAACAGAAACATCAGATGAGTGTGAGACGCTTAGTTCAAGCAGCTGTGGATCTAGTCAAACAGAAGGGGAAGTTAAAAGTTCGGATTTGACGCTAAAAGACCTTCTAGATTTGGCGAGTTTAGGGAAAGAAGAAGCAGCTTTTGTTCCACTGTTGGAAGAGGCATGCATATGGCATCCTTCCCTTATAAGAAGCCAGAGGAAAAGTTCAAGATGGTTTAAACTATGGGCATTCACATCCTTAGGTCAAGTTCTATACTTACTCAAGACAAGTAAAGCAAAGGATATGAATGAAGATGCATGCAATCGTCTTCATGGGTTATGGGAGGAACTTGTTAAACATTCGGGATTTCAGTTGTCTTGGTTGGAGCCTTATGTTCAATCTGCATTGGGTATGAAAGCTCATTTGGAAAAGACAGAAGAGGTCAACAAACTCAAAGACAGTGTTGTTGCTTTGGAGATCAAAATGAAGAAGCTGAGGGGAGAATTGGCAGCTGCAGAAGCTGAGTTTGAGGTAACAAGGAGGGCATTGCTTGAGGCCAGAAAAGGTTTCATAGAGTTGGATTTTAATTCTGAATTAGGTTATGCTATGTTTTAG 1134 0.3995 MSLATRMDTQRETSIVFETFTWKIQNFSKQNTKKLQSKAFRIRGYKWRIRLYPLMRNVDHFSLYLMVADSLPPYGWNRNTYFKLSLINQLDENKSVVKETQQKFNGGYRSWGSFFVNRSVFFDSKQGYLVNDTCIIEAHVCVSDLSTIEVNKLNTISAKLGDEGRRNSESTEQEDDKETETETSDECETLSSSSCGSSQTEGEVKSSDLTLKDLLDLASLGKEEAAFVPLLEEACIWHPSLIRSQRKSSRWFKLWAFTSLGQVLYLLKTSKAKDMNEDACNRLHGLWEELVKHSGFQLSWLEPYVQSALGMKAHLEKTEEVNKLKDSVVALEIKMKKLRGELAAAEAEFEVTRRALLEARKGFIELDFNSELGYAMF* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0641 377 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 17 182 IPR008974 GO:0005515
Vra3g0641 377 Coils Coil 321 355 - -
Vra3g0641 377 SUPERFAMILY TRAF domain-like 19 143 - -
Vra3g0641 377 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 17 357 - -
Vra3g0641 377 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 17 357 - -
Vra3g0641 377 MobiDBLite consensus disorder prediction 186 202 - -
Vra3g0641 377 Pfam MATH domain 24 141 IPR002083 GO:0005515
Vra3g0641 377 ProSiteProfiles MATH/TRAF domain profile. 17 140 IPR002083 GO:0005515
Vra3g0641 377 MobiDBLite consensus disorder prediction 162 202 - -
Vra3g0641 377 CDD MATH 19 140 IPR002083 GO:0005515
Vra3g0641 377 SMART math_3 19 121 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0641 Vra-Chr3 6961223 6963129 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0641 - - gmx:102664376 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0641 3 6961223 6963129 Vra8g0588 8 9134998 9173388 PCT
Vra8g0190 8 2288684 2290710 Vra3g0641 3 6961223 6963129 PCT