Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0190 ATGGTGACTGAATTGAGCAGAAGTGTTGATTTCGAGAAGTTCTCATGGAAAATTGAGGATTTCTCTAAACAAAATATCATGAAACTGCGCTCCAAGCCTTTCAAAATCCGTGGCTGTACATGGAGGATCCTTGTGCATCCATTGAGGAGTGATGTCAACCATTTTTCAGTGTATTTGATGGTTGCTGATTCTTTACCTCCGTACGGATGGACCAGACACACCTTTTTCAAGTTGGTTCTGATCAACCAAGTGGACAACAGAAAAACAATTGAAAAAGAGACCAAACAGAAGTTCAATGGAGGATATCGTAGCTGGGGTTCATTTTTCTTGAATCTAAGTGATTTCTACAACCATAACAAAGGATATCTTGTGAAGAACAGCTGCATCATTGAGGCACACATCTGTGTCTCGGATTTAGCACCCAATATTCAGGTTCACCCAAATTGTTCTCCATATCATGACTCTTCATCAGGTGGTCAAGCAACAGAAACATCCTCGGATAGGGACAGCATTAGTCCGAGAACCTCAGGATCTAGTGCAGCAGAAGGGGAAACTCAAAAGGGTTGTTCAAGCAGTTTGACACTGAGAGAACTCATAGATTTGAAGATTTTAGCAGAAGAAGAAGAAGCCTTCATTCCACTGCTGGAAGAGGCTTGCATATGGCATCCAAACCTTATACAGTGCCAGAAAGAGAGAACTCGCGGGTTCAGACAATGGGCATTCACATCATTAGGCCAAGTTCTTCATTTTCTGAAGACCAAAAGGGTTAAAGATATGAGTGAAGAAGACATAAAGCATCTTCGTGATTTGTGGAAGGAACTTGTGAAATCCTCAGGGTTTGATTTGGCATGGCTGAAACCTTATGTTGAATCAGCATTGGGTTTGAAAGCTTACACGGAAAAAGCAAAGCAGTTGAAGAAACTGAAGGACACTGTGGTTGGTTTGGAGATCAAGATGAAGAGACTGAGAGGGGAACTTGCTGCTGCTGAAGGATTGTTTGAGGTTGCAAGAAGAGAGTTATCAGAAGTAAGAAGAGGTTTCAATGAGATGGATATGAACTCTACAATTGGATATGCTATGTTTTAG 1086 0.4144 MVTELSRSVDFEKFSWKIEDFSKQNIMKLRSKPFKIRGCTWRILVHPLRSDVNHFSVYLMVADSLPPYGWTRHTFFKLVLINQVDNRKTIEKETKQKFNGGYRSWGSFFLNLSDFYNHNKGYLVKNSCIIEAHICVSDLAPNIQVHPNCSPYHDSSSGGQATETSSDRDSISPRTSGSSAAEGETQKGCSSSLTLRELIDLKILAEEEEAFIPLLEEACIWHPNLIQCQKERTRGFRQWAFTSLGQVLHFLKTKRVKDMSEEDIKHLRDLWKELVKSSGFDLAWLKPYVESALGLKAYTEKAKQLKKLKDTVVGLEIKMKRLRGELAAAEGLFEVARRELSEVRRGFNEMDMNSTIGYAMF* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0190 361 ProSiteProfiles MATH/TRAF domain profile. 11 134 IPR002083 GO:0005515
Vra8g0190 361 Coils Coil 305 339 - -
Vra8g0190 361 SMART math_3 13 115 IPR002083 GO:0005515
Vra8g0190 361 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 343 - -
Vra8g0190 361 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 343 - -
Vra8g0190 361 SUPERFAMILY TRAF domain-like 13 138 - -
Vra8g0190 361 MobiDBLite consensus disorder prediction 151 188 - -
Vra8g0190 361 CDD MATH 13 134 IPR002083 GO:0005515
Vra8g0190 361 Pfam MATH domain 19 134 IPR002083 GO:0005515
Vra8g0190 361 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 10 146 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0190 Vra-Chr8 2288684 2290710 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0190 - - vra:106771542 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0190 8 2288684 2290710 Vra3g0641 3 6961223 6963129 PCT