Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0588 ATGACTCTAATGACTACGTCTCCTTTCGATCGCCAACAACCGCAGCCATCGCCGCAGCAGCAGCCGCATGATGAGATTGAGGTTCCTCCCGGTCCTGAACCTATGGAAGCAGCAGAAAGCACGAGTATAGTGGCTGCTCCATCATTGGATGATACACCATCTGCGAAATTCACCTGGACCATTGACAATTTTTCAAAACTTCCTCACAAAGTCTTCTCTGATGTTTTCTGTGTAGGGGGCTTTAACTGGCGGGTACTTATCTTTTCAAAGGGAAACAGTGTTGACCATCTTTCAATGTATGTAGATGTTGCAGATGCAGCTAATTTGCCTCACGGTTGGAGTAAACATGCCCAACTTAGTTTGACTGTTGTTAATCAAATTCATAGTAACTTTTCAATAAGAAAAGAATGTCATCATCAGTTCCATGCACGTGAGTGTGATTGGGGTTTCCAACATTTCATGCCACTTGCTCAATTGTATGATTCTGCTAGAGGTTATCTCGTGAATGATACATGTATAGTTGAGGCTGCCATTACTGTGCGTAAAGACATGGATTGGTCATATGACTCAAAAAAGGAAACTGGTTATGTTGGACTAAAAAACCAAGGAGCTACTTGTTATATGAATTCCCTGCTTCAAACACTGTACCACATTTCTTATTTTCGAAAGGCTGTGTACCATATGCCCACGACTGAAAATGATTTGCCATCAAGGAGCATACATCTTGCATTACAGAGTTTGTTTTACAAATTGCAGTACAGTGACACTAGTGTAGCAACGAAAGAGTTAACCAAGTCTTTTGGATGGGATACATATGATTCATTCATGCAGCATGATGTCCAAGAACTTAATAGGGTTCTTTGTGAGAAGCTAGAAGATAAAATGAAGGGAACTGTTGTGGAAGGCACTATACAGAAATTATTTGAAGGCCACCATATGAACTATATTGAATGCATCAATGAGGATTACAAATCAACAAGAAAGGAGTCATTTTATGATCTTCAGCTTGATGTCAAAGGCTGTAAGGATGTGTATGCTTCTTTTGATAAGTTTGTGGAAGTGGAACGGCTTGAGGGTGATAACAAATATCATGCTGAGCACCATGGGTTACAGGATGCTAGGAAGGGTGTATTGTTCATTGATTTCCCACCTGTTCTACAGCTTCAGTTAAAACGGTTTGAGTATGATTTTATGCGAGACACTATGGTGAAGATCAATGATCGCTATGAGTTCCCTTTGCAACTAGATCTTGATAGGGATAATGGCAAGTATCTATCACCTGAAGCTGACAGAAGTATTCGGAATCTTTATTCACTTCACAGTGTTTTGGTGCACAGTAGTGGGGTGAATGGTGGACACTACTATGCTTACATTAGGCCAACGCTATCAAACCAGTGGTTTAAGTTTGATGACGAACGTGTAACAAAAGAGGATGAAAAAAGGGCTTTAGAAGAACAGTATGGCGGTGAAGAGGAGTTACCTCATACTAATCCTGGGTTCAACAACTCTTCCTTTAAATTTACAAAATACTCAAATGCATATATGCTTGTCTATGTACGGGAAAGTGACAAGGATAAAATAATTTTTGATGTGGATGAGCTTGACATTGCTGAACACCTTAGAATGAGATTAAAGAGAGAACAAGAAGAAAAAGATTTGAAGAGGAAGGAGAAGGCTGAGGCTCACTTGTACACCATCATAAAGGTTGCTCGTGATGAAGACTTGCGTGAGCAGATTGGGAATGATATATTCTTTGATCTTGTGGATCATGATAAAGTTCCAAATGTTCGTATTCAAAAACAAATGCCGTTTTTAGATTTCAAGGAAGAAGTTGCCAAGGAATTTGGTATACCCATCCAGTATCAACGTTTTTGGTTGTGGGCAAAGCGCCAAAACAACACATACAGGCCAAATAGAGCACTGACACCTCAGGAAGAAGCACAATCAGTTGGACTCTTAAGAGAAATTTCCAATAGATCCAATAATGCAGAGCTAAAGTTATTTTTGGAACTAGAAATAGGGAAGGATTTGCAGCCTATTCCTCCTCCTGAGAAGTCAAAAGAGAATCTGTTGCTTTTCTTTAAACTTTATGAGCCTTCAAACGAAAAGCTTAGGTATGTTGGACGGCTCTTTGTGATGTTCAGTGGTAAGCCAGTAGATATATTGGTAAAACTAAATGAAATGGCTGGATATGCTCCTGATGAAGAAATTGAAATGTTTGAGGAGATAAAATTTGAACCTAATGTCATGTGTGAACGTGTTGACAAGAATTCCACGTTCCGTGAGAGTCAGCTTGAGGATGGTGACATTATTTGCTTTCAGAAGTCCAACAAAACTGAAAACAAAGAGCAATATCGCTATCCAGATGTTCCTTCTTTCTTGGAATATGTGCATAACCGTGTGGTTGTTCGCTTTAGGATTTTGGAAAAACCAAATGAGGATGAATTTTGTCTTGAGCTGTCAAAGCTTGACACCTATGACAATGTTGTTGAAGAAGTTGCTCATCATATTGGTTTGAATGATCCTTCTAAAATCAGACTCACATGTCATAACTGTTACTCCCAGCAACCTAAACCGCATTCTATAAAGTACAGAGGAATAGAACGGTTGTCAGACATGCTGATTCACTCTAATCAGGCTTCTGATATTCTATACTACGAAGTATTGGATATCCCTTTGCCAGAATTGCAATGCCTAAAAACTCTTAAAATTGCTTTCCATCATGCTTCCAAGAATGAAGTGGTGATTCATACTATTAGATTACAGAAGCATTGTATTGTGTCAGATGTAATTAATGGTCTTAAATCAAAGGTTGATTTATCACGTCCAGATGCAGAACTTAGATTGCTTGAAATTTTTTATCACAAGATCTATAAGATATTCCATGTCAATGAACGGATTGAGAATATTAATGATCAGTATTGGACACTCCGAGCAGAAGAGATTCCAGAGGAGGAGAAAAACCTTAGCCCTCAACATCGTTTGATCCATGTTTATCATTTCTTGAAAGACACAAATCAAAATCAGCAAGTTCAGAACTTCGGACATCCTTTTTTCTTAGTGATCCATGAGGGTGAGACATTGGCTGAAGTCAAATTGCGAATACAGAGAAAGTTGCAAGTTCCAGATGAGGAGTTTTCCAAGTGGAGATTTGCATTTTTGTCATTTGGTCATCCGGAGTATCTTCAAGATTCAGATATTGTTTCCACTCGGTTTCAGAGAAGGGATATATATGGCGCATGGGAGCAGTATCTCGGACTGGAACACACTGACAATACTCCTAGAAGATCGAATGCAGCGAATCAGAATCGTCACCCATACGAGAAGGCAGTAAAAATCCATGTTTAG 3348 0.3919 MTLMTTSPFDRQQPQPSPQQQPHDEIEVPPGPEPMEAAESTSIVAAPSLDDTPSAKFTWTIDNFSKLPHKVFSDVFCVGGFNWRVLIFSKGNSVDHLSMYVDVADAANLPHGWSKHAQLSLTVVNQIHSNFSIRKECHHQFHARECDWGFQHFMPLAQLYDSARGYLVNDTCIVEAAITVRKDMDWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHISYFRKAVYHMPTTENDLPSRSIHLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINEDYKSTRKESFYDLQLDVKGCKDVYASFDKFVEVERLEGDNKYHAEHHGLQDARKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDNGKYLSPEADRSIRNLYSLHSVLVHSSGVNGGHYYAYIRPTLSNQWFKFDDERVTKEDEKRALEEQYGGEEELPHTNPGFNNSSFKFTKYSNAYMLVYVRESDKDKIIFDVDELDIAEHLRMRLKREQEEKDLKRKEKAEAHLYTIIKVARDEDLREQIGNDIFFDLVDHDKVPNVRIQKQMPFLDFKEEVAKEFGIPIQYQRFWLWAKRQNNTYRPNRALTPQEEAQSVGLLREISNRSNNAELKLFLELEIGKDLQPIPPPEKSKENLLLFFKLYEPSNEKLRYVGRLFVMFSGKPVDILVKLNEMAGYAPDEEIEMFEEIKFEPNVMCERVDKNSTFRESQLEDGDIICFQKSNKTENKEQYRYPDVPSFLEYVHNRVVVRFRILEKPNEDEFCLELSKLDTYDNVVEEVAHHIGLNDPSKIRLTCHNCYSQQPKPHSIKYRGIERLSDMLIHSNQASDILYYEVLDIPLPELQCLKTLKIAFHHASKNEVVIHTIRLQKHCIVSDVINGLKSKVDLSRPDAELRLLEIFYHKIYKIFHVNERIENINDQYWTLRAEEIPEEEKNLSPQHRLIHVYHFLKDTNQNQQVQNFGHPFFLVIHEGETLAEVKLRIQRKLQVPDEEFSKWRFAFLSFGHPEYLQDSDIVSTRFQRRDIYGAWEQYLGLEHTDNTPRRSNAANQNRHPYEKAVKIHV* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0588 1115 CDD MATH 56 179 IPR002083 GO:0005515
Vra8g0588 1115 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 197 521 IPR028889 -
Vra8g0588 1115 CDD peptidase_C19C 195 523 - -
Vra8g0588 1115 Gene3D - 682 799 - -
Vra8g0588 1115 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 84 1040 - -
Vra8g0588 1115 SUPERFAMILY TRAF domain-like 51 183 - -
Vra8g0588 1115 Pfam MATH domain 61 180 IPR002083 GO:0005515
Vra8g0588 1115 Pfam Ubiquitin carboxyl-terminal hydrolase 197 518 IPR001394 GO:0004843|GO:0016579
Vra8g0588 1115 Pfam Ubiquitin-specific protease C-terminal 884 1094 IPR029346 -
Vra8g0588 1115 SMART math_3 56 159 IPR002083 GO:0005515
Vra8g0588 1115 Coils Coil 537 557 - -
Vra8g0588 1115 SUPERFAMILY Cysteine proteinases 192 546 IPR038765 -
Vra8g0588 1115 Gene3D Cysteine proteinases 194 522 - -
Vra8g0588 1115 MobiDBLite consensus disorder prediction 1 36 - -
Vra8g0588 1115 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 198 213 IPR018200 GO:0004843|GO:0006511
Vra8g0588 1115 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 52 193 IPR008974 GO:0005515
Vra8g0588 1115 Gene3D - 800 897 - -
Vra8g0588 1115 MobiDBLite consensus disorder prediction 1 22 - -
Vra8g0588 1115 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 622 874 IPR024729 -
Vra8g0588 1115 PANTHER UBIQUITIN-SPECIFIC PROTEASE 12-RELATED 84 1040 - -
Vra8g0588 1115 ProSiteProfiles MATH/TRAF domain profile. 54 178 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0588 Vra-Chr8 9134998 9173388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0588 197 476 Miscellaneous Gene Families AT2G24640 26.230 2.73e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0588 K11838 - gmx:100337655 1914.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0641 3 6961223 6963129 Vra8g0588 8 9134998 9173388 PCT