Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0520 ATGCAGAGTGAGCAACAGAGCAACAACAACAGCAACAACCAGTTGGTAGTGCAGAATTCGGGGAGCTTGAGCTTCAGCAGCCATTTGTCGAAGGAAGATGAAGAGATGTCAAGGTCTGCTCTTTCCACCTTCAGGGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTGGGTCGCGTCGAGGAAGAAACCAAACGTCTTGCCACCATTCGTGAGGAGCTGGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAAGATCGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATGCCTGCCAGAAGAAGGAGAAAGAATACAAAGACGCCCTCGAAGCTTTTAATGAAAAGAACAGAGAAAAAGTACAGCTAATCACCAAGTTAATGGAGTTGGTGAGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGCAAGAACGTAGATTCGTTGCAATGA 510 0.4588 MQSEQQSNNNSNNQLVVQNSGSLSFSSHLSKEDEEMSRSALSTFRAKEEEIERKKMEVREKVQLQLGRVEEETKRLATIREELEALADPMRKEVALVRKKIDSVNKELKPLGHACQKKEKEYKDALEAFNEKNREKVQLITKLMELVSESERLRMKKLEELSKNVDSLQ* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0520 169 Coils Coil 41 61 - -
Vra3g0520 169 MobiDBLite consensus disorder prediction 28 50 - -
Vra3g0520 169 MobiDBLite consensus disorder prediction 1 27 - -
Vra3g0520 169 PANTHER RAB6-INTERACTING PROTEIN GORAB 13 167 IPR007033 -
Vra3g0520 169 PANTHER EXPRESSED PROTEIN 13 167 - -
Vra3g0520 169 Coils Coil 115 135 - -
Vra3g0520 169 MobiDBLite consensus disorder prediction 1 50 - -
Vra3g0520 169 Pfam Transcriptional activator 18 167 IPR007033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0520 Vra-Chr3 5850280 5852361 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0520 - - gmx:100499923 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0520 3 5850280 5852361 Vra8g1935 8 36870328 36872171 ECH
Vra3g0520 3 5850280 5852361 Vra3g0520 3 5850280 5852361 ECH
Vra3g0520 3 5850280 5852361 Vra2g0828 2 7596766 7601428 ECH