Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1077 ATGTCCATCAAAATTTTGGTTGTTTCCTTCATACTAACCTCAGTACTGTTCTTTCTTGTTTTCACTACAACAAGATTAACCATACCCAGTTCCAGCATGAAGCCTTCTATGAACTACTTGAACAGCACCAAGGCCAACAACACATATCCAGTTACATTTGCGTACTTGATCTCTGCTTCCAAAGGGGATTCCGGGAAGCTGAAAAGGTTGGTGAGGGCTCTCTACCATCCAGGAAACTACTATTTGATTCATATGGATTCTGGGGCACCACAAGCTGAACACAGGGATGTGGTTCAACATGTGGCTAAGGACCCAGTTTATGCTGCATTTGGGAACGTTTGGGTTGTCGAAAAGCGTAATCTTGTCACCTATAAAGGACCAACCATGCTTTCTACCACTCTCCATGCTATGGCAATCCTTCTCCGGAGTTGCCAATGGGATTGGTTTATTAATCTCAGTGCCTCGGACTACCCTTTGGTTACACAAGATGATATGATCCAAGCCTTTTCTGAGGTTCCAAAGCATATAAATTTCATTCACCACAGCAGTCAGTTGGGTTGGAAATTGAATAAGAGAGGGAAGCCAATAATTATAGACCCAGGGCTGTATAGTCTCAAGAAATCACAGATTTGGTGGGTCACTAAGCAGAGGAGTCTCCCAACATCTTTTAAACTTTATACAGGTTCAGCATGGACAATACTATCAAGATCTTTTGCAGAGTATTGCATAGTTGGGTGGGAAAATTTGCCAAGAACACTCCTCCTCTACTACACAAACTTTGTGTCATCCCCAGAAGGATATTTCCAAACAGTTATTTGCAACTCCAAGGACTACAAAAACACCACAGCAAACAGTGATCTGCATTACATCACTTGGGACTATCCTCCAAAACAACACCCAAGAACACTAGGACTCAAAGATTACAGAAAAATGGTGCTGAGCAACCGTCCATTTGCCAGAAAATTCAAGAAAAATGACCCTCTTCTAGATAAGATTGACAGAGAGCTTTTGAAGAGGAATCGTGGGGAGTTTTCTTTTGGAGGATGGTGCTCAGATGGAGAAAGGCATAATACAGTTTGCTCAGGTTTCAAACATCACAATTATAGTCTTCTCAAACCTGGCCCTGCCTCAAAAAAGTTGAAGTTTCTGCTGTCCTACATTCTCTCTCGCAAAGTTTTTCACAAGCGCCAATGCCGCTAA 1200 0.4225 MSIKILVVSFILTSVLFFLVFTTTRLTIPSSSMKPSMNYLNSTKANNTYPVTFAYLISASKGDSGKLKRLVRALYHPGNYYLIHMDSGAPQAEHRDVVQHVAKDPVYAAFGNVWVVEKRNLVTYKGPTMLSTTLHAMAILLRSCQWDWFINLSASDYPLVTQDDMIQAFSEVPKHINFIHHSSQLGWKLNKRGKPIIIDPGLYSLKKSQIWWVTKQRSLPTSFKLYTGSAWTILSRSFAEYCIVGWENLPRTLLLYYTNFVSSPEGYFQTVICNSKDYKNTTANSDLHYITWDYPPKQHPRTLGLKDYRKMVLSNRPFARKFKKNDPLLDKIDRELLKRNRGEFSFGGWCSDGERHNTVCSGFKHHNYSLLKPGPASKKLKFLLSYILSRKVFHKRQCR* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1077 399 Pfam Core-2/I-Branching enzyme 53 311 IPR003406 GO:0016020|GO:0016757
Vra1g1077 399 PANTHER GLYCOSYLTRANSFERASE 2 398 IPR044610 GO:0015020
Vra1g1077 399 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 2 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1077 Vra-Chr1 13074682 13080742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1077 53 399 Glycosyltransferase AT4G27480 56.609 4.03e-150 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1077 - - gmx:100812712 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1077 1 13074682 13080742 Vra1g1077 1 13074682 13080742 ECH
Vra1g1077 1 13074682 13080742 Vra4g0981 4 16922958 16926014 PCT
Vra1g1077 1 13074682 13080742 Vra7g2247 7 42440930 42444603 PCT