Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0877 ATGATGGAAGTTGTGATTGTTGCACTTGCGGCCACACTTGGGAATCTTCTGATGGGATGGGATAGTTCAACTATTGCAGCTGGTACGACCTACATCAAGAAGGAGTTCGTAGTGGACGCGACAATTGAAGGGATAATTGTGTCCATGTCGTTTATAACCGGTACTGTTGTGACAATATTCTCCGGGGCAGTGTCTGATATGATTGGAAGACGTCCTATGCTCATAACATCTTCTGTAATGTATTTCCTGAGTGGTCTGGTAATGTTTTTTGCTCCTAATGTTGCTGTTATTCTGGTAGCGAGGATAGTGAATGGGGTTGCCATTGGTCTGGCTTATACTCTTAATCCTCTCTACATATCTGAGGTAGCACCGGCCGATATCAGAGGCCAATTGAACACTTTTACTCAGTTCGCTTGTTCTGGTGGAATGTTTTTGGCTTACGTTATGGTGTTCTTAATGTCCTTGACTGACTCACCAAGTTGGAGACTCATGCTTGGAGTTATTTCAATTCCTGCTGTTGCCTACTTTTTACTGACTGTCTTTTACCTGCCCGAGTCTCCAAGATGGCTTGTGAGTAAAGGTCGGATACTTGAGGCTGAAAGAGTTCTGAAAAGGCTTCGTGGCACTGATGATGTTTCAGGGGAATTGGCGTTGCTGGCTGAGGGTCTCAGCCCTGGGGGTGAAGCCACTTCCATAGAAGAGTATGTAGTTGCCCCAGCTGGCGAGATTCTTGTTAACCAGGAAGCAGGGAAAGATTATATAAAGTTATATGGTCCCAATGAGGGGGTTACAATGGTTGCTCAACCGGTGAATGGACAGGGTAGCTTGATATCCCGTAGTATGTTGTCTCAGCAAGGAAGCTTTGGGGGTCTGTCTAGTACTGGTATTAAGGATCCTATTGTCAATCTCTTCGGAAGTTTGCATGAGAGTACTCTCCCTGAGAGTGGAGGTTCACGCAGCATGCTAATTCATAATGCAAACAGTATCTTTAGCATGGGAGAGCCAGATTCTCCCTTTGGTACCGGTGACAACCTGCATGCGCCACTAATGTCATTTCAAGGGGGTGCTGGTGAAAGGGCTCATGGATCAAAGGACATGTTGGGTATGAGGAGCACTAGCAGCTTGAGAAGTAATAGTAGTTTAGCTCATGGGAATGCGGTTGAAACTCCTAAAAATACAAACATTGGTGGAGGTTGGCAGTTGGTTTATAAATCAGCTGATGGTGTTGGTGGTGGGAAAAGAGAAGGGCTCCAAAGGGTTTATTTGCATGCGGAACCTACTGCAGTGTCTAACTCGCAGCATGTTTCATCATTTGTTTCAACTTCTGGCTATGACATACCAATAGATGGCGGTGAAGCGTATCAAGCTGCTGCTCTTGTTAGTCAGTCAGTTCTAGGAACTCATGATTTGTTGCATCTGCCAGAAGTTGCGGCAAAAGGCTCAAAATGGAGAGCTCTGCTAGAACCAGGAGTCAAGCGTGCATTAGTTGTTGGCATAGGACTTCAAATTCTTCAACAGGCTGCTGGCATAAATGGGTTTCTGTACTATGCTCCCCAGATTCTTGAACAGGCAGAAATAGGAGCTCTTTTATCAAATTTGGGCCTTAGTTCTGCATCTGCTTCTTTTCTTGTAACTATCATTACAACATTCTGTATGCTTCCTTGTATAGCTCTTGCAATCAGACTCATGGATATTTCTGGCAGGAGGTCTATCATGCTGTACACAATACCCATTTTGATAGTTTGCCTCCTGGCACTAATAATCAAGCAGTTCTTTGAACTAAATTCTGTGATCAATGCTGCAATCACTTGTATCAGTGTTGTGGCTTATGAAAGCGTCTTCTGCATGGGCTTTGGCGTTATTCCAAACATCATATGTGCGGAAATCTTCCCAACAAGTGTTCGTGGAATCTGCATTTCCCTGACTTCTCTTACATATTGGAGTTGTACCTTGATTGTGACCTTAGTATTCCCCACCTTGCTCCAGCTTCTCGGTCTCCCTGGTGTCTTTGGGTTATTTGTCCTTGGCTGCATCATTTCATGGACATTTGTCTACCTGAAAGTTCCTGAAACAAAAGGCATGCCTTTAGAAGTTATTATTGAATTTTTTGCTCTTGGTGCAAAACCTGGTACTGATCCTGCAGCAATTGGAATCAAATAG 2160 0.4421 MMEVVIVALAATLGNLLMGWDSSTIAAGTTYIKKEFVVDATIEGIIVSMSFITGTVVTIFSGAVSDMIGRRPMLITSSVMYFLSGLVMFFAPNVAVILVARIVNGVAIGLAYTLNPLYISEVAPADIRGQLNTFTQFACSGGMFLAYVMVFLMSLTDSPSWRLMLGVISIPAVAYFLLTVFYLPESPRWLVSKGRILEAERVLKRLRGTDDVSGELALLAEGLSPGGEATSIEEYVVAPAGEILVNQEAGKDYIKLYGPNEGVTMVAQPVNGQGSLISRSMLSQQGSFGGLSSTGIKDPIVNLFGSLHESTLPESGGSRSMLIHNANSIFSMGEPDSPFGTGDNLHAPLMSFQGGAGERAHGSKDMLGMRSTSSLRSNSSLAHGNAVETPKNTNIGGGWQLVYKSADGVGGGKREGLQRVYLHAEPTAVSNSQHVSSFVSTSGYDIPIDGGEAYQAAALVSQSVLGTHDLLHLPEVAAKGSKWRALLEPGVKRALVVGIGLQILQQAAGINGFLYYAPQILEQAEIGALLSNLGLSSASASFLVTIITTFCMLPCIALAIRLMDISGRRSIMLYTIPILIVCLLALIIKQFFELNSVINAAITCISVVAYESVFCMGFGVIPNIICAEIFPTSVRGICISLTSLTYWSCTLIVTLVFPTLLQLLGLPGVFGLFVLGCIISWTFVYLKVPETKGMPLEVIIEFFALGAKPGTDPAAIGIK* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0877 719 MobiDBLite consensus disorder prediction 367 390 - -
Vra11g0877 719 Pfam Sugar (and other) transporter 7 219 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra11g0877 719 Pfam Sugar (and other) transporter 480 700 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra11g0877 719 ProSitePatterns Sugar transport proteins signature 2. 103 128 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra11g0877 719 ProSitePatterns Sugar transport proteins signature 1. 61 78 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra11g0877 719 Gene3D MFS general substrate transporter like domains 475 708 IPR036259 -
Vra11g0877 719 PANTHER - 1 716 - -
Vra11g0877 719 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY-RELATED 1 716 - -
Vra11g0877 719 MobiDBLite consensus disorder prediction 356 390 - -
Vra11g0877 719 Gene3D MFS general substrate transporter like domains 2 242 IPR036259 -
Vra11g0877 719 PRINTS Sugar transporter signature 15 25 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0877 719 PRINTS Sugar transporter signature 98 117 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0877 719 PRINTS Sugar transporter signature 505 515 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0877 719 PRINTS Sugar transporter signature 604 625 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0877 719 PRINTS Sugar transporter signature 627 639 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra11g0877 719 SUPERFAMILY MFS general substrate transporter 7 697 IPR036259 -
Vra11g0877 719 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 692 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0877 Vra-Chr11 7420304 7424085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0877 49 715 Organic Solute Cotransporters AT3G51490 52.924 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0877 - - gmx:100789093 1197.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0877 11 7420304 7424085 Vra11g0877 11 7420304 7424085 ECH
Vra5g1895 5 24711067 24716402 Vra11g0877 11 7420304 7424085 ECH
Vra11g0877 11 7420304 7424085 Vra7g0230 7 3497097 3499683 PCT