Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0784 ATGGCTCCTTCAACTAGATTCTCCACCTCTTTTCTCACACTATGTCTCTTCCAATTTCTAACAGGTTCCTACTCGACGACATTCACCATTGTGAACAAGTGCAGCTACACAGTGTGGCCCGGCATTTTATCCGGTGCTGGAACCTCTCCGCTCTCCACCACCGGCTTTGCTTTGCAGTCCGGCGAGTCCAACGTTGTCGGTTTGCCACCCGCCTGGTCCGGCCGCCTCTGGGGGCGTACCCTCTGCTCCCAAGACGACGCTGGGAAATTCTCCTGTGTCACCGGAGATTGTGGCTCCTCCGCCGTGGAATGCGCCGGAGGTAACGCCGCCCCGCCGGCCACGCTAGCAGAGTTCACTCTGAACGGAGCCGGCGGCCTGGATTTCTTCGACGTGAGCCTGGTCGACGGTTACAACCTCCCGATGATCGTGGAGCCCCAGGGCGGAACCGGCGGCGGAAACTGCACCGCGACGGGGTGCGTGGTGGACCTGAACACACCCTGCCCCACGGAGCTCAAGGTGACGAGCAGCGGCGAGGGCGTGGCGTGTAGAAGCGCGTGTGAAGCTTTCAATGACCCACAGTACTGCTGCAGTGGCGCTTACGCGACGCCCGACACATGCAAACCCAGTTCCTACTCGCAGTTCTTCAAGAGCGCGTGCCCACGCGCTTACAGCTACGCTTACGACGATGGCACCAGCACCTTCACTTGCGCCTCTGCGGATTATACCATCACTTTCTGCCCGCAACCCTCCACAAGTTCGATAAAATCGGGGAACCCGATGGCGGTGGAAACCTCTGGAGGTGATTTAGACGGAAGATACAACCGTGTTATGGCGGTGGTTGTTTCTGTTTTGGTGGCGTTTGTGGCAACAACTCAGTTTGGTGGTCTTTCACTGGCAGTGTCGCTATAA 909 0.5831 MAPSTRFSTSFLTLCLFQFLTGSYSTTFTIVNKCSYTVWPGILSGAGTSPLSTTGFALQSGESNVVGLPPAWSGRLWGRTLCSQDDAGKFSCVTGDCGSSAVECAGGNAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMIVEPQGGTGGGNCTATGCVVDLNTPCPTELKVTSSGEGVACRSACEAFNDPQYCCSGAYATPDTCKPSSYSQFFKSACPRAYSYAYDDGTSTFTCASADYTITFCPQPSTSSIKSGNPMAVETSGGDLDGRYNRVMAVVVSVLVAFVATTQFGGLSLAVSL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0784 302 Gene3D Thaumatin 26 247 IPR037176 -
Vra11g0784 302 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Vra11g0784 302 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Vra11g0784 302 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Vra11g0784 302 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Vra11g0784 302 SMART tha2 28 247 IPR001938 -
Vra11g0784 302 Pfam Thaumatin family 32 247 IPR001938 -
Vra11g0784 302 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Vra11g0784 302 CDD TLP-PA 27 246 - -
Vra11g0784 302 ProSiteProfiles Thaumatin family profile. 25 247 IPR001938 -
Vra11g0784 302 PIRSF PR5 1 293 IPR001938 -
Vra11g0784 302 PANTHER OS03G0233200 PROTEIN 14 267 IPR001938 -
Vra11g0784 302 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 14 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0784 Vra-Chr11 6462626 6464645 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0784 1 267 Receptor kinase-like Gene Family AT5G38280 49.815 6.34e-87 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0784 - - pvu:PHAVU_002G107900g 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1658 5 22973038 22976084 Vra11g0784 11 6462626 6464645 ECH
Vra11g0784 11 6462626 6464645 Vra11g0784 11 6462626 6464645 ECH
Vra11g0784 11 6462626 6464645 Vra7g0144 7 2430053 2431777 PCT