Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0144 ATGTTTCCCTTCTCACATTCTTCTCATCAATCCATCGTTTTCCTACTTATTCATGCTTTCATAGGGGTGGGAGTTTCGGCGACAACATTCACATTCGTCAACAAGTGCGACCACACAGTGTGGCCGGGGATTCTAGGAAAGCCGGACCTCGGAACATCCGGTTTCGAGCTCAAAAGGGGAAGCACGCGAACCTTCGACGCGCCACCGGGTTGGTCGGGGCGTTTCTGGGGCAGAACCGGTTGCCAGTTCGACGACTCGGGCCACGGAAACTGCGCCACGGGCGACTGCGGCTCTGGCGAGGTACTCTGCAACGGAAACGGCGCCACGCCGCCGGCTACACTTGCCGAGTTCACTCTTGGGTCAGGGTCTCCGGACTACTACGACGTCAGCCTCGTCGACGGTTACAACCTCCCGATGATGGTGGAATCAAGCGGCGGCTCCGGCTCGTGCGCCACCACCGGTTGCGGGGCGGACCTAAACCGACGGTGCCCAGCGGAGCTGAGGGTTGAAGGCGGCGACGCGTGCCAGAGCGCGTGTCGCGCGTTCGGGAAACCGGAGTTTTGCTGCAGCGGCGCGTTTAATTCACCGTCGGCATGCGCGCCTTCGATGTACTCGGAGATTTTTAAGAACGCGTGCCCCAAATCTTATAGCTACGCTTTTGATGATGCTACCAGCACTTTTACTTGCACCGCAGCGGATTACACTGTCACATTCTGTCCTTCTTCTTCTCCAAGTTTGAAGTCTTTGATGGAATCGGGGCCAGGATCATCAGTGGAACAGGCAGCAGTGGCTACTACTTCATGGATAGCGAATTTGGCTACAGGGGATTCGAGCAGAAGGAAACCATTTTCAGCTTCCAAGTCTGCATTTTTTGTTTCTGTCACTTTCATTCTTTCCTATTTAGTCTCATAG 912 0.5537 MFPFSHSSHQSIVFLLIHAFIGVGVSATTFTFVNKCDHTVWPGILGKPDLGTSGFELKRGSTRTFDAPPGWSGRFWGRTGCQFDDSGHGNCATGDCGSGEVLCNGNGATPPATLAEFTLGSGSPDYYDVSLVDGYNLPMMVESSGGSGSCATTGCGADLNRRCPAELRVEGGDACQSACRAFGKPEFCCSGAFNSPSACAPSMYSEIFKNACPKSYSYAFDDATSTFTCTAADYTVTFCPSSSPSLKSLMESGPGSSVEQAAVATTSWIANLATGDSSRRKPFSASKSAFFVSVTFILSYLVS* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0144 303 SUPERFAMILY Osmotin, thaumatin-like protein 28 241 IPR037176 -
Vra7g0144 303 SMART tha2 30 240 IPR001938 -
Vra7g0144 303 PRINTS Pathogenesis-related protein signature 29 41 IPR001938 -
Vra7g0144 303 PRINTS Pathogenesis-related protein signature 53 62 IPR001938 -
Vra7g0144 303 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Vra7g0144 303 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Vra7g0144 303 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Vra7g0144 303 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Vra7g0144 303 ProSiteProfiles Thaumatin family profile. 27 240 IPR001938 -
Vra7g0144 303 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 5 264 - -
Vra7g0144 303 PANTHER OS03G0233200 PROTEIN 5 264 IPR001938 -
Vra7g0144 303 Gene3D Thaumatin 28 240 IPR037176 -
Vra7g0144 303 CDD TLP-PA 29 239 - -
Vra7g0144 303 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Vra7g0144 303 Pfam Thaumatin family 34 240 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0144 Vra-Chr7 2430053 2431777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0144 11 278 Receptor kinase-like Gene Family AT5G38280 44.484 2.70e-79 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0144 - - gmx:100808342 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0784 11 6462626 6464645 Vra7g0144 7 2430053 2431777 PCT