Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1658 ATGGAACAGCTTAAACTATCACTTCAATTTTTACTAACACTTCATCTATTAGCATCAGGTGCAGTATCAACAACAACGTTCACCGTCGTTAACAAATGCGACTACTCCGTGTGGCCAGGCATTCTCTCAAACGCAGGAATCGCGGCGCTTCCAACAACCGGTTTCCTTCTCCAAACCGGTGAGTCCAAAACCGTAACCGCTCCAACCTCTTGGGGTGGCCGTTTATGGGGCCGTACTCTCTGCTCGCAAGACTCCGCCGGAAAATTCTTCTGCCTCACAGGCGATTGTGGCTCCGGCACAATCGAATGTGAGGGCAAAGGCGCCGTGCCGCCCGCGACCTTGGCCGAGTTCACTCTCGACGGCGACGGAGGCCTCGATTTCTTCGACGTAAGCCTCGTGGACGGCTACAACGTGCCGATGCTGGTGACTCCCCGGGGTGGCTCTGGCGATAACTGCACCAGCACTGGGTGCGTTGGGGACCTCAACGGCGCGTGCCCTTCGGAGCTTAGGGTCACAAGCGAGGATGGAAAACAGAGCGTGGCGTGTAAGAGCGCGTGCGAGGCGTTCGGGTCCCCGCAGTATTGCTGCAAAGGCGCGTATGGGTCTCCCAACACTTGCAAGCCTACGGCATATTCGCGGATTTTCAAGAACGCTTGCCCACGCGCCTACAGCTACGCGTATGATGACAGGACTAGCACTTTTACATGTGGACACTCTGCGGATTACACCATCACCTTCTGCCCTTCCCCTAAAGATAACCCCAGTCAGAAATCGTGGCAGGGGCAAAACCCGAAATCAGATAGCAGTAATGAGGGGCAAAACCCAAAATCAGATAGCAGCAGTAATTGTTCTTCTTCTTCTTCTGAGTCGCCGCCAGTTAACAATGGCACAATGGTGTATATGGACGAAAGTGAATTTTCATGGTCAGTAGGTACCCATGTGACTGTGAAGGAATCTCAAGCCATTGCTGGTTTTGTCAGTATCACCATTGCTCTTTGGCTCTTGTGCAACTTATAG 1017 0.53 MEQLKLSLQFLLTLHLLASGAVSTTTFTVVNKCDYSVWPGILSNAGIAALPTTGFLLQTGESKTVTAPTSWGGRLWGRTLCSQDSAGKFFCLTGDCGSGTIECEGKGAVPPATLAEFTLDGDGGLDFFDVSLVDGYNVPMLVTPRGGSGDNCTSTGCVGDLNGACPSELRVTSEDGKQSVACKSACEAFGSPQYCCKGAYGSPNTCKPTAYSRIFKNACPRAYSYAYDDRTSTFTCGHSADYTITFCPSPKDNPSQKSWQGQNPKSDSSNEGQNPKSDSSSNCSSSSSESPPVNNGTMVYMDESEFSWSVGTHVTVKESQAIAGFVSITIALWLLCNL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1658 338 SUPERFAMILY Osmotin, thaumatin-like protein 25 249 IPR037176 -
Vra5g1658 338 SMART tha2 27 248 IPR001938 -
Vra5g1658 338 CDD TLP-PA 26 247 - -
Vra5g1658 338 Gene3D Thaumatin 25 248 IPR037176 -
Vra5g1658 338 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vra5g1658 338 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Vra5g1658 338 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Vra5g1658 338 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Vra5g1658 338 MobiDBLite consensus disorder prediction 251 296 - -
Vra5g1658 338 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Vra5g1658 338 PANTHER OS03G0233200 PROTEIN 4 275 IPR001938 -
Vra5g1658 338 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Vra5g1658 338 Pfam Thaumatin family 31 248 IPR001938 -
Vra5g1658 338 PANTHER BNAA02G17480D PROTEIN 4 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1658 Vra-Chr5 22973038 22976084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1658 1 266 Receptor kinase-like Gene Family AT5G38280 53.137 2.58e-96 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1658 - - gmx:100795186 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1658 5 22973038 22976084 Vra11g0784 11 6462626 6464645 ECH
Vra5g1658 5 22973038 22976084 Vra5g1658 5 22973038 22976084 ECH